Variant report

Variant	rs16950562
Chromosome Location	chr15:44036364-44036365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:41)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:41 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr15:44036104-44036376	GM12878	blood:	n/a	n/a
2	SPI1	chr15:44036222-44036459	K562	blood:	n/a	n/a
3	SPI1	chr15:44036221-44036548	HL-60	blood:	n/a	n/a
4	SPI1	chr15:44036113-44036540	HL-60	blood:	n/a	n/a
5	SPI1	chr15:44035726-44036539	GM12891	blood:	n/a	n/a
6	ATF2	chr15:44036163-44036572	GM12878	blood:	n/a	n/a
7	MXI1	chr15:44036190-44036376	GM12878	blood:	n/a	n/a
8	FOXM1	chr15:44036046-44036538	GM12878	blood:	n/a	n/a
9	BCL11A	chr15:44036222-44036455	GM12878	blood:	n/a	n/a
10	NFIC	chr15:44035800-44036749	GM12878	blood:	n/a	n/a
11	SPI1	chr15:44035486-44036996	GM12878	blood:	n/a	n/a
12	SPI1	chr15:44036158-44036467	GM12878	blood:	n/a	n/a
13	RUNX3	chr15:44036083-44036516	GM12878	blood:	n/a	n/a
14	BCLAF1	chr15:44036122-44036511	GM12878	blood:	n/a	n/a
15	SPI1	chr15:44035744-44036483	GM12891	blood:	n/a	n/a
16	REST	chr15:44036214-44036483	Hela-S3	cervix:	n/a	n/a
17	ELF1	chr15:44036058-44036377	GM12878	blood:	n/a	chr15:44036316-44036329
18	PAX5	chr15:44036093-44036419	GM12878	blood:	n/a	n/a
19	IRF4	chr15:44036087-44036573	GM12878	blood:	n/a	n/a
20	TBP	chr15:44036193-44036393	GM12878	blood:	n/a	n/a
21	SP1	chr15:44036149-44036496	GM12878	blood:	n/a	n/a
22	RUNX3	chr15:44036136-44036517	GM12878	blood:	n/a	n/a
23	MTA3	chr15:44036066-44036606	GM12878	blood:	n/a	n/a
24	MAX	chr15:44036127-44036462	NB4	blood:	n/a	n/a
25	RCOR1	chr15:44036238-44036441	GM12878	blood:	n/a	n/a
26	NFIC	chr15:44035751-44036519	GM12878	blood:	n/a	n/a
27	IRF4	chr15:44036031-44036562	GM12878	blood:	n/a	n/a
28	EP300	chr15:44036223-44036428	GM12878	blood:	n/a	n/a
29	PML	chr15:44036156-44036555	GM12878	blood:	n/a	n/a
30	SPI1	chr15:44036158-44036490	GM12878	blood:	n/a	n/a
31	BHLHE40	chr15:44036123-44036507	GM12878	blood:	n/a	n/a
32	PAX5	chr15:44036168-44036394	GM12878	blood:	n/a	n/a
33	MYC	chr15:44036133-44036464	NB4	blood:	n/a	n/a
34	SPI1	chr15:44036137-44036466	K562	blood:	n/a	n/a
35	POU2F2	chr15:44036135-44036770	GM12878	blood:	n/a	n/a
36	MAX	chr15:44036167-44036438	GM12878	blood:	n/a	n/a
37	CHD2	chr15:44036259-44036411	GM12878	blood:	n/a	n/a
38	MAX	chr15:44036166-44036393	K562	blood:	n/a	n/a
39	ELF1	chr15:44036197-44036413	K562	blood:	n/a	chr15:44036316-44036329
40	EP300	chr15:44036157-44036464	GM12878	blood:	n/a	n/a
41	ZNF384	chr15:44035902-44036400	GM12878	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44036049..44038671-chr15:44067430..44069245,2	K562	blood:
2	chr15:44034068..44036503-chr15:44037132..44039251,3	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STRC-1	chr15:44036011-44036766	NONHSAT042114
2	lnc-STRC-1	chr15:44036349-44036417	NONHSAT042115

No data

Variant related genes	Relation type
PDIA3	TF binding region
ENSG00000167004	Chromatin interaction
ENSG00000205771	Chromatin interaction
ENSG00000128886	Chromatin interaction

Extended variants
information (count: 135 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10163054	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10438303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518820	0.88[CEU][hapmap]
rs11070407	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070408	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11852840	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11856184	0.87[EUR][1000 genomes]
rs11856795	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11857661	0.92[EUR][1000 genomes]
rs12101756	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437808	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs12441127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12441861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12441984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12442129	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12442297	1.00[CEU][hapmap]
rs12443102	0.88[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs12702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13329084	0.87[CEU][hapmap]
rs13380397	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16963953	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16965120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16977724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs16977798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2228368	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2260160	0.88[CEU][hapmap]
rs2277531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2412810	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2439	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2447193	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs2447196	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2447208	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs2447211	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2447212	0.90[EUR][1000 genomes]
rs2467402	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2467426	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470121	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs2614811	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2614819	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28433760	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28495368	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs28502289	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28504496	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28509275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs28513374	1.00[CHB][hapmap]
rs28542007	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28546844	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28578041	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28578398	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28583806	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28590651	0.81[EUR][1000 genomes]
rs28595038	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28606452	0.90[EUR][1000 genomes]
rs28636829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs28674750	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28678901	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28684672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs28699233	0.87[CEU][hapmap]
rs28712213	0.80[EUR][1000 genomes]
rs28718261	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28781888	0.81[EUR][1000 genomes]
rs28891769	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2915776	0.87[EUR][1000 genomes]
rs2915779	0.87[EUR][1000 genomes]
rs2915792	0.84[EUR][1000 genomes]
rs2920781	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs2927071	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2927072	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs2927075	0.89[EUR][1000 genomes]
rs2955969	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2957637	0.90[EUR][1000 genomes]
rs3097773	0.88[CEU][hapmap]
rs3101443	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs35457073	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3736180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3742982	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3759790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3759791	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3784275	0.87[CEU][hapmap]
rs3816792	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs3825783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes]
rs3862142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4332723	1.00[ASN][1000 genomes]
rs4997480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs524908	1.00[CHB][hapmap]
rs533143	1.00[CHB][hapmap]
rs56008017	0.81[EUR][1000 genomes]
rs575082	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs57865312	0.90[EUR][1000 genomes]
rs60883262	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62018952	0.85[ASN][1000 genomes]
rs667476	0.95[CHB][hapmap]
rs688009	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs693919	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs694461	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7168158	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7169322	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7169988	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7170167	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7171750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7174208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7174732	0.94[ASN][1000 genomes]
rs7175032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7175129	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7180818	0.84[ASN][1000 genomes]
rs7181039	1.00[CEU][hapmap]
rs72714307	0.88[AMR][1000 genomes]
rs8023458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8023508	1.00[CHB][hapmap]
rs8023696	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8029210	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030169	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8032649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs8033846	0.91[ASN][1000 genomes]
rs8033995	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8042868	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs9944216	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9989313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv2758379	chr15:43823158-44148641	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	esv2760028	chr15:43823158-44148641	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv427960	chr15:43823158-44148641	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	esv2757598	chr15:43831923-44058634	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv904150	chr15:43836478-44040965	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv904158	chr15:43852043-44053617	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
10	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
12	nsv976928	chr15:43948866-44040886	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
14	esv33661	chr15:44016519-44064420	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs16950562	ADAL	cis	Esophagus Muscularis	GTEx
rs16950562	ELL3	cis	multi-tissue	Pritchard
rs16950562	ADAL	cis	Artery Tibial	GTEx
rs16950562	ADAL	cis	lung	GTEx
rs16950562	ADAL	cis	Adipose Subcutaneous	GTEx
rs16950562	CKMT1A	cis	Skin Sun Exposed Lower leg	GTEx
rs16950562	CKMT1A	cis	Esophagus Mucosa	GTEx
rs16950562	ADAL	cis	Nerve Tibial	GTEx
rs16950562	ELL3	Cis_1M	lymphoblastoid	RTeQTL
rs16950562	ADAL	cis	Stomach	GTEx
rs16950562	CATSPER2	cis	Esophagus Mucosa	GTEx
rs16950562	ADAL	cis	Thyroid	GTEx
rs16950562	AC011330.5	cis	Esophagus Mucosa	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44013400-44037400	Weak transcription	Fetal Intestine Small	intestine
2	chr15:44020000-44038000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:44028000-44038000	Weak transcription	HSMMtube	muscle
4	chr15:44032600-44037800	Weak transcription	Liver	Liver
5	chr15:44032800-44038000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:44033800-44037800	Weak transcription	Right Ventricle	heart
7	chr15:44034400-44037800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:44035000-44037200	Weak transcription	K562	blood
9	chr15:44035400-44036400	Enhancers	GM12878-XiMat	blood
10	chr15:44035800-44037800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:44036000-44037200	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:44036200-44036400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr15:44036200-44036400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr15:44036200-44036400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr15:44036200-44037000	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links