Variant report

Variant	rs2277531
Chromosome Location	chr15:44069069-44069070
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:179)
CpG islands
(count:61)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:179 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr15:44068235-44069934	GM19193	blood:	n/a	n/a
2	HEY1	chr15:44069013-44069230	HepG2	liver:	n/a	n/a
3	EGR1	chr15:44069037-44069561	MCF-7	breast:	n/a	chr15:44069273-44069282 chr15:44069270-44069283 chr15:44069272-44069282 chr15:44069220-44069234 chr15:44069223-44069236 chr15:44069270-44069283 chr15:44069272-44069282 chr15:44069270-44069283 chr15:44069270-44069284 chr15:44069271-44069282 chr15:44069270-44069283
4	POLR2A	chr15:44068955-44069210	HepG2	liver:	n/a	n/a
5	YY1	chr15:44068690-44069292	GM12892	blood:	n/a	n/a
6	E2F6	chr15:44068953-44070051	K562	blood:	n/a	chr15:44069651-44069662
7	MAX	chr15:44068884-44070213	A549	lung:	n/a	chr15:44069272-44069281
8	CHD2	chr15:44069059-44070042	Hela-S3	cervix:	n/a	chr15:44069237-44069247
9	MAX	chr15:44068476-44070069	H1-hESC	embryonic stem cell:	n/a	chr15:44069272-44069281
10	YY1	chr15:44068912-44069261	GM12878	blood:	n/a	n/a
11	CTCF	chr15:44068920-44069070	GM06990	blood:	n/a	n/a
12	RFX5	chr15:44068982-44070064	Hela-S3	cervix:	n/a	n/a
13	TBL1XR1	chr15:44069018-44069162	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:44068892-44069185	U87	brain:	n/a	n/a
15	POLR2A	chr15:44068968-44069209	H1-hESC	embryonic stem cell:	n/a	n/a
16	SIN3AK20	chr15:44068265-44069835	PANC-1	pancreas:	n/a	n/a
17	POLR2A	chr15:44067575-44069189	H1-hESC	embryonic stem cell:	n/a	n/a
18	BHLHE40	chr15:44068300-44069998	GM12878	blood:	n/a	n/a
19	POLR2A	chr15:44067544-44070106	GM12892	blood:	n/a	n/a
20	MAX	chr15:44069008-44070199	A549	lung:	n/a	chr15:44069272-44069281
21	POLR2A	chr15:44068945-44069416	H1-hESC	embryonic stem cell:	n/a	n/a
22	RELA	chr15:44068228-44070039	GM12891	blood:	n/a	n/a
23	POLR2A	chr15:44064991-44070109	GM12878	blood:	n/a	n/a
24	MAX	chr15:44068470-44070125	HepG2	liver:	n/a	chr15:44069272-44069281
25	POLR2A	chr15:44068897-44070084	GM12892	blood:	n/a	n/a
26	CTCF	chr15:44068930-44070159	A549	lung:	n/a	chr15:44069758-44069774 chr15:44069757-44069775
27	POLR2A	chr15:44064546-44069220	GM12878	blood:	n/a	n/a
28	EP300	chr15:44068263-44069919	GM12878	blood:	n/a	n/a
29	RUNX3	chr15:44068099-44070145	GM12878	blood:	n/a	chr15:44069713-44069730
30	SIN3AK20	chr15:44068631-44069179	H1-hESC	embryonic stem cell:	n/a	n/a
31	YY1	chr15:44068259-44069089	GM12878	blood:	n/a	n/a
32	HEY1	chr15:44068920-44070109	HepG2	liver:	n/a	n/a
33	EP300	chr15:44068276-44069090	GM12878	blood:	n/a	n/a
34	STAT5A	chr15:44067733-44069918	GM12878	blood:	n/a	chr15:44068876-44068888
35	EBF1	chr15:44067585-44069985	GM12878	blood:	n/a	chr15:44068925-44068935 chr15:44068495-44068506 chr15:44068534-44068545 chr15:44067839-44067848 chr15:44068924-44068937 chr15:44068926-44068935
36	MTA3	chr15:44067495-44070163	GM12878	blood:	n/a	n/a
37	POLR2A	chr15:44069031-44069459	Gliobla	brain:	n/a	n/a
38	POU2F2	chr15:44068914-44070006	GM12878	blood:	n/a	chr15:44069228-44069240
39	MYC	chr15:44068252-44070111	NB4	blood:	n/a	chr15:44069272-44069281
40	POLR2A	chr15:44068899-44069969	PANC-1	pancreas:	n/a	n/a
41	SIN3A	chr15:44067607-44070030	H1-hESC	embryonic stem cell:	n/a	chr15:44069898-44069907
42	MAX	chr15:44069061-44070128	ECC-1	luminal epithelium:	n/a	chr15:44069272-44069281
43	TBP	chr15:44068200-44069898	H1-hESC	embryonic stem cell:	n/a	n/a
44	REST	chr15:44068872-44069146	H1-hESC	embryonic stem cell:	n/a	n/a
45	UBTF	chr15:44068554-44069095	K562	blood:	n/a	n/a
46	POLR2A	chr15:44063327-44069078	K562	blood:	n/a	n/a
47	POLR2A	chr15:44068303-44069995	HUVEC	blood vessel:	n/a	n/a
48	POLR2A	chr15:44067319-44070009	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr15:44068960-44069110	GM12873	blood:	n/a	n/a
50	MAX	chr15:44068806-44070180	HCT-116	colon:	n/a	chr15:44069272-44069281

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:44069062-44069112	Hepatocyte	liver:	n/a
2	chr15:44069062-44069112	HCPEpiC	choroid plexus:	n/a
3	chr15:44069062-44069112	AG04450	lung:	fetal
4	chr15:44069062-44069112	GM12891	blood:	n/a
5	chr15:44069062-44069112	AoSMC	blood vessel:	n/a
6	chr15:44069062-44069112	ProgFib	skin:	n/a
7	chr15:44069062-44069112	NHBE	bronchial:	n/a
8	chr15:44069062-44069112	K562	blood:	n/a
9	chr15:44069062-44069112	GM19239	blood:	n/a
10	chr15:44069062-44069112	HL-60	blood:	n/a
11	chr15:44069062-44069112	SK-N-SH	brain:	n/a
12	chr15:44069062-44069112	U87	brain:	n/a
13	chr15:44069062-44069112	HCM	heart:	n/a
14	chr15:44069062-44069112	HepG2	liver:	n/a
15	chr15:44069062-44069112	RPTEC	kidney:	n/a
16	chr15:44069062-44069112	PANC-1	pancreas:	n/a
17	chr15:44069062-44069112	HUVEC	blood vessel:	n/a
18	chr15:44069062-44069112	HCF	heart:	n/a
19	chr15:44069062-44069112	HNPCEpiC	eye:	n/a
20	chr15:44069062-44069112	GM12878	blood:	n/a
21	chr15:44069062-44069112	ovcar-3	ovarian:	n/a
22	chr15:44069062-44069112	HRPEpiC	eye:	n/a
23	chr15:44069062-44069112	T-47D	breast:	n/a
24	chr15:44069062-44069112	HAEpiC	amniotic membrane:	n/a
25	chr15:44069062-44069112	GM06990	blood:	n/a
26	chr15:44069062-44069112	HMEC	breast:	n/a
27	chr15:44069062-44069112	NB4	blood:	n/a
28	chr15:44069062-44069112	AG09319	gingival:	n/a
29	chr15:44069062-44069112	Jurkat	blood:	n/a
30	chr15:44069062-44069112	MCF-7	breast:	n/a
31	chr15:44069062-44069112	BE2_C	brain:	n/a
32	chr15:44069062-44069112	SK-N-SH_RA	brain:	n/a
33	chr15:44069062-44069112	HRCEpiC	kidney:	n/a
34	chr15:44069062-44069112	HEEpiC	esophagus:	n/a
35	chr15:44069062-44069112	PrEC	prostate:	n/a
36	chr15:44069062-44069112	A549	lung:	n/a
37	chr15:44069062-44069112	HCT-116	colon:	n/a
38	chr15:44069062-44069112	SK-N-MC	brain:	n/a
39	chr15:44069062-44069112	HIPEpiC	eye:	n/a
40	chr15:44069062-44069112	NH-A	brain:	n/a
41	chr15:44069062-44069112	HEK293	kidney:	embryo
42	chr15:44069062-44069112	CMK	blood:	n/a
43	chr15:44069062-44069112	AG09309	skin:	n/a
44	chr15:44069062-44069112	BJ	skin:	n/a
45	chr15:44069062-44069112	LNCaP	prostate:	n/a
46	chr15:44069062-44069112	GM12892	blood:	n/a
47	chr15:44069062-44069112	NHDF-neo	bronchial:	n/a
48	chr15:44069062-44069112	Caco-2	colon:	n/a
49	chr15:44069062-44069112	PFSK-1	brain:	n/a
50	chr15:44069062-44069112	ECC-1	luminal epithelium:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:44066200..44071612-chr15:44082403..44086035,7	K562	blood:
2	chr15:44068962..44069474-chr2:25194570..25195267,2	Hela-S3	cervix:
3	chr15:44066929..44069824-chr15:44091677..44094250,3	K562	blood:
4	chr15:44060010..44065607-chr15:44066577..44070669,7	K562	blood:
5	chr15:44067949..44070096-chr15:44073710..44075913,2	MCF-7	breast:
6	chr15:44065408..44074556-chr15:44080543..44088380,28	MCF-7	breast:
7	chr15:44062113..44074982-chr15:44088756..44097846,29	MCF-7	breast:
8	chr15:44036049..44038671-chr15:44067430..44069245,2	K562	blood:
9	chr15:44065227..44073214-chr15:44081584..44094479,46	MCF-7	breast:
10	chr15:44067455..44069837-chr15:44100088..44102912,2	MCF-7	breast:
11	chr15:44067854..44069742-chr15:44115622..44117150,2	MCF-7	breast:
12	chr15:44060550..44065898-chr15:44066868..44071265,7	MCF-7	breast:
13	chr15:44068154..44070774-chr15:44115060..44118766,3	K562	blood:
14	chr15:44037743..44040701-chr15:44068299..44070156,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MFAP1-2	chr15:44068968-44069166	NONHSAT042124

No data

Variant related genes	Relation type
SERF2	TF binding region
ELL3	TF binding region
ELL3	CpG island
SERF2	CpG island
ENSG00000242028	Chromatin interaction
ENSG00000184716	Chromatin interaction
ENSG00000167004	Chromatin interaction
ENSG00000140259	Chromatin interaction
ENSG00000221792	Chromatin interaction
ENSG00000224165	Chromatin interaction
ENSG00000115137	Chromatin interaction
ENSG00000140264	Chromatin interaction
ENSG00000268488	Chromatin interaction
ENSG00000205771	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10163054	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10438303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10518820	0.86[CEU][hapmap]
rs11070408	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11070410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11852840	0.92[ASN][1000 genomes]
rs11856795	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12101756	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12437808	0.82[ASN][1000 genomes]
rs12440573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs12441127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12441861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12441984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12442129	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12442297	1.00[CEU][hapmap]
rs12443102	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs12702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13329084	0.85[CEU][hapmap]
rs13380397	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16950562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16963953	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16965120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs16977724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs16977798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1965795	0.82[ASN][1000 genomes]
rs2228368	0.87[ASN][1000 genomes]
rs2260160	0.86[CEU][hapmap]
rs2412810	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2439	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2447193	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2447196	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2447208	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2447211	0.87[CEU][hapmap]
rs2467402	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2467426	0.87[CEU][hapmap]
rs2470121	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2614811	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2614819	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28377539	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28413704	0.82[ASN][1000 genomes]
rs28476182	0.81[ASN][1000 genomes]
rs28495368	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs28502289	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28504496	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28509275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs28513374	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs28519630	0.82[ASN][1000 genomes]
rs28524541	0.83[ASN][1000 genomes]
rs28531819	0.83[ASN][1000 genomes]
rs28542007	0.87[AFR][1000 genomes]
rs28546844	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28564774	0.83[ASN][1000 genomes]
rs28578398	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28583806	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28590651	0.86[ASN][1000 genomes]
rs28595038	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28636829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs28674750	0.86[ASN][1000 genomes]
rs28678901	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28679673	0.83[ASN][1000 genomes]
rs28684672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs28687459	0.83[ASN][1000 genomes]
rs28696802	0.83[ASN][1000 genomes]
rs28699233	0.85[CEU][hapmap]
rs28707214	0.83[ASN][1000 genomes]
rs28718261	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28780699	0.83[ASN][1000 genomes]
rs28781888	0.83[ASN][1000 genomes]
rs28866846	0.81[ASN][1000 genomes]
rs28891769	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2920781	0.86[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2927071	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2927072	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2955969	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3097773	0.87[CEU][hapmap]
rs3101443	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs35457073	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3736180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs3742982	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3759790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3759791	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs3784275	0.85[CEU][hapmap]
rs3816792	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3825783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs3862142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4332723	0.83[ASN][1000 genomes]
rs4997480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs524908	1.00[CHB][hapmap]
rs533143	1.00[CHB][hapmap]
rs56008017	0.84[ASN][1000 genomes]
rs56909447	0.83[ASN][1000 genomes]
rs575082	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs60883262	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62018952	0.93[ASN][1000 genomes]
rs667476	0.95[CHB][hapmap]
rs68079546	0.83[ASN][1000 genomes]
rs688009	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs693919	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs694461	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7168158	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7169322	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7169382	0.87[ASN][1000 genomes]
rs7169988	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7170167	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7171750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7174208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7175032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7175129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7179388	0.83[ASN][1000 genomes]
rs7180818	0.96[ASN][1000 genomes]
rs7181039	1.00[CEU][hapmap]
rs7183809	0.83[ASN][1000 genomes]
rs8023458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8023508	1.00[CHB][hapmap]
rs8023696	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8029210	0.81[ASN][1000 genomes]
rs8032649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs8033995	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs8040839	0.84[ASN][1000 genomes]
rs8042868	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs9944216	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9989313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv2758379	chr15:43823158-44148641	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	esv2760028	chr15:43823158-44148641	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv427960	chr15:43823158-44148641	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
8	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
9	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
10	nsv1036318	chr15:44053617-44160773	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs2277531	ADAL	cis	Esophagus Muscularis	GTEx
rs2277531	ELL3	Cis_1M	lymphoblastoid	RTeQTL
rs2277531	AC011330.5	cis	Esophagus Mucosa	GTEx
rs2277531	ADAL	cis	Thyroid	GTEx
rs2277531	ADAL	cis	Artery Tibial	GTEx
rs2277531	ADAL	cis	Nerve Tibial	GTEx
rs2277531	CKMT1A	cis	Esophagus Mucosa	GTEx
rs2277531	CKMT1A	cis	Thyroid	GTEx
rs2277531	CATSPER2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44066400-44069400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:44066600-44069200	Weak transcription	HSMMtube	muscle
3	chr15:44067600-44069600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr15:44067800-44070000	Active TSS	Sigmoid Colon	Sigmoid Colon
5	chr15:44068000-44070000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr15:44068000-44070200	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr15:44068000-44070200	Active TSS	Rectal Smooth Muscle	rectum
8	chr15:44068200-44069200	Flanking Active TSS	Pancreas	Pancrea
9	chr15:44068200-44069800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:44068200-44069800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:44068200-44070000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr15:44068200-44070000	Active TSS	Gastric	stomach
13	chr15:44068200-44070200	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr15:44068200-44070200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:44068200-44070200	Active TSS	K562	blood
16	chr15:44068400-44069200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:44068400-44069200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr15:44068400-44069200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr15:44068400-44069200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr15:44068400-44069200	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr15:44068400-44069200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr15:44068400-44069600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:44068400-44069800	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr15:44068400-44069800	Active TSS	Primary T cells from cord blood	blood
25	chr15:44068400-44069800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:44068400-44069800	Active TSS	Fetal Intestine Large	intestine
27	chr15:44068400-44069800	Active TSS	Thymus	Thymus
28	chr15:44068400-44070000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:44068400-44070000	Active TSS	Fetal Kidney	kidney
30	chr15:44068400-44070000	Active TSS	Stomach Mucosa	stomach
31	chr15:44068400-44070200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:44068400-44070200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:44068400-44070200	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr15:44068400-44070200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:44068400-44070200	Active TSS	Fetal Intestine Small	intestine
36	chr15:44068400-44070200	Flanking Active TSS	Fetal Muscle Trunk	muscle
37	chr15:44068400-44070200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr15:44068400-44070200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr15:44068400-44070200	Active TSS	HepG2	liver
40	chr15:44068400-44070200	Active TSS	NHDF-Ad	bronchial
41	chr15:44068400-44070400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:44068600-44069200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:44068600-44069200	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr15:44068600-44069200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:44068600-44069200	Flanking Active TSS	Fetal Brain Female	brain
46	chr15:44068600-44069200	Flanking Active TSS	Spleen	Spleen
47	chr15:44068600-44069200	Flanking Active TSS	Dnd41	blood
48	chr15:44068600-44069400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:44068600-44069400	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr15:44068600-44069400	Active TSS	NH-A	brain

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