Variant report

Variant	rs8042868
Chromosome Location	chr15:43939642-43939643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:43938241-43939653	GM12878	blood:	n/a	chr15:43939215-43939228 chr15:43939217-43939226 chr15:43939216-43939229 chr15:43939218-43939225
2	POLR2A	chr15:43939459-43939758	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
PDIA3P2	TF binding region

Extended variants
information (count: 226 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10163054	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10438303	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10518820	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes]
rs11070407	0.90[EUR][1000 genomes]
rs11070408	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11070410	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs11852840	0.82[EUR][1000 genomes]
rs11856184	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11857661	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101756	0.86[EUR][1000 genomes]
rs12437808	0.82[EUR][1000 genomes]
rs12440573	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12441127	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12441861	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12441984	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12442129	0.82[EUR][1000 genomes]
rs12443102	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12702	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap]
rs13380397	0.82[EUR][1000 genomes]
rs16950562	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs16963953	0.82[EUR][1000 genomes]
rs16965120	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs1814538	0.88[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs2245715	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs2253708	0.88[CEU][hapmap]
rs2255440	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs2259174	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2260160	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs2264876	0.90[MEX][hapmap];0.84[TSI][hapmap]
rs2277531	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs2412810	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2439	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2439831	0.88[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs2439832	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs2439850	0.86[CEU][hapmap]
rs2444032	0.88[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]
rs2444250	0.88[CEU][hapmap]
rs2447193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447195	0.88[ASN][1000 genomes]
rs2447196	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2447197	0.89[ASN][1000 genomes]
rs2447198	0.81[ASN][1000 genomes]
rs2447208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447210	0.98[ASN][1000 genomes]
rs2447211	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447212	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447213	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2447215	1.00[ASN][1000 genomes]
rs2467402	0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2467426	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2467736	0.88[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs2467739	0.88[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]
rs2470120	0.99[ASN][1000 genomes]
rs2470121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470124	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2470134	0.83[AMR][1000 genomes]
rs2614811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2614819	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2614822	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2788	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes]
rs28366727	0.98[ASN][1000 genomes]
rs28433760	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28475234	0.82[AMR][1000 genomes]
rs28495368	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs28502289	0.90[EUR][1000 genomes]
rs28504496	0.89[EUR][1000 genomes]
rs28509275	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs28513374	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs28542007	0.92[EUR][1000 genomes]
rs28546844	0.82[EUR][1000 genomes]
rs28578041	0.92[EUR][1000 genomes]
rs28578398	0.82[EUR][1000 genomes]
rs28595038	0.89[EUR][1000 genomes]
rs28606452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28636829	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs28678901	0.82[EUR][1000 genomes]
rs28684672	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs28699233	0.90[MEX][hapmap]
rs28704825	0.84[ASN][1000 genomes]
rs28712213	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28718261	0.89[EUR][1000 genomes]
rs28891769	0.82[EUR][1000 genomes]
rs2915776	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915779	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2915792	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2920780	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2920781	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2920782	0.98[ASN][1000 genomes]
rs2927071	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2927072	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2927075	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2955969	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2957636	0.98[ASN][1000 genomes]
rs2957637	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957639	0.98[ASN][1000 genomes]
rs3097773	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs3099045	0.96[ASN][1000 genomes]
rs3099047	0.92[ASN][1000 genomes]
rs3101443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35457073	0.90[EUR][1000 genomes]
rs3736180	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs3759790	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap]
rs3759791	0.86[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs3784275	0.90[MEX][hapmap];0.87[TSI][hapmap]
rs3816792	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs3825783	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs3862142	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs495175	0.88[CEU][hapmap]
rs496584	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs4997480	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs527921	0.88[CEU][hapmap];0.90[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs544122	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs575082	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]
rs57865312	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60883262	0.82[EUR][1000 genomes]
rs689647	0.88[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs689754	0.87[CEU][hapmap]
rs689781	0.88[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs689826	0.88[CEU][hapmap]
rs690436	0.88[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs693919	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]
rs694461	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]
rs694985	0.88[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs7168158	0.86[EUR][1000 genomes]
rs7169322	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap]
rs7169988	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes]
rs7170167	0.82[EUR][1000 genomes]
rs7171750	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs7173487	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs7174208	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.86[EUR][1000 genomes]
rs7175032	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes]
rs7175129	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs8023458	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs8023696	0.92[EUR][1000 genomes]
rs8029210	0.90[EUR][1000 genomes]
rs8032649	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap]
rs8033995	0.88[CEU][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:89 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv832988	chr15:43804641-43976862	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv428304	chr15:43823158-44008580	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv2758379	chr15:43823158-44148641	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	esv2760028	chr15:43823158-44148641	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
8	nsv427960	chr15:43823158-44148641	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
9	nsv428633	chr15:43823160-44008580	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1039949	chr15:43831879-43992646	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	esv2757598	chr15:43831923-44058634	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	esv2761766	chr15:43834318-44014255	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv524910	chr15:43836478-43939642	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv904148	chr15:43836478-43961204	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv904149	chr15:43836478-44011113	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv904150	chr15:43836478-44040965	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv1039818	chr15:43845410-43988541	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv1048041	chr15:43845410-43991014	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	esv2760393	chr15:43845422-44024490	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
20	nsv870240	chr15:43851142-43988761	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
21	nsv534652	chr15:43851548-43948346	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	nsv994950	chr15:43851548-43951301	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	nsv904152	chr15:43852043-43940806	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	nsv904153	chr15:43852043-43951118	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
25	nsv904154	chr15:43852043-43961204	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv904155	chr15:43852043-43988573	Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	nsv904156	chr15:43852043-44011113	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
28	nsv904157	chr15:43852043-44019592	Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
29	nsv904158	chr15:43852043-44053617	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
30	esv3413623	chr15:43852060-43973058	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	esv13634	chr15:43852144-43988641	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
32	esv3506095	chr15:43853954-43953553	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	esv3506097	chr15:43853954-43953553	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
34	nsv1514	chr15:43859260-43996580	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
35	nsv904159	chr15:43873489-43939642	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
36	nsv904160	chr15:43873489-43940806	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
37	nsv904161	chr15:43873489-43961204	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
38	nsv904162	chr15:43873489-44011113	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
39	nsv904163	chr15:43873489-44023963	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
40	esv2421427	chr15:43885118-43988553	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
41	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
42	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
43	nsv868983	chr15:43888927-43951301	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
44	nsv915702	chr15:43888952-43951317	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
45	esv33424	chr15:43888955-43995223	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
46	nsv904164	chr15:43888976-43939642	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
47	nsv904165	chr15:43888976-43940806	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
48	esv3443586	chr15:43889625-43973121	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
49	nsv569244	chr15:43891512-43939642	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
50	nsv904166	chr15:43891512-43939642	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs8042868	ADAL	cis	Adipose Subcutaneous	GTEx
rs8042868	ADAL	cis	Stomach	GTEx
rs8042868	ELL3	cis	Lymphoblastoid	GTEx
rs8042868	ELL3	cis	multi-tissue	Pritchard
rs8042868	SERF2	cis	lymphoblastoid	seeQTL
rs8042868	ADAL	cis	Thyroid	GTEx
rs8042868	TGM5	cis	lymphoblastoid	seeQTL
rs8042868	ADAL	cis	Skin Sun Exposed Lower leg	GTEx
rs8042868	ELL3	Cis_1M	lymphoblastoid	RTeQTL
rs8042868	CKMT1A	cis	Esophagus Mucosa	GTEx
rs8042868	ADAL	cis	Artery Tibial	GTEx
rs8042868	ADAL	cis	lung	GTEx
rs8042868	CKMT1A	cis	Skin Sun Exposed Lower leg	GTEx
rs8042868	ELL3	cis	lymphoblastoid	seeQTL
rs8042868	ADAL	cis	Esophagus Muscularis	GTEx
rs8042868	C15orf63	cis	lymphoblastoid	seeQTL

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43915400-43941000	Weak transcription	Hela-S3	cervix
2	chr15:43919600-43941600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:43920400-43941400	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:43921000-43940600	Weak transcription	Gastric	stomach
5	chr15:43921400-43950400	Weak transcription	Aorta	Aorta
6	chr15:43921800-43952600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:43923200-43951800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:43925200-43939800	Weak transcription	Brain Anterior Caudate	brain
9	chr15:43929600-43940200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:43931200-43943600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:43931200-43952000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:43931200-43952600	Weak transcription	Left Ventricle	heart
13	chr15:43931400-43942400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:43932800-43943600	Weak transcription	NHEK	skin
15	chr15:43933800-43941000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:43934200-43940200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:43934200-43941400	Weak transcription	Fetal Stomach	stomach
18	chr15:43934200-43941600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:43935200-43942200	Weak transcription	Esophagus	oesophagus
20	chr15:43935400-43943200	Weak transcription	Ovary	ovary
21	chr15:43935800-43940800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:43935800-43941000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:43935800-43941200	Weak transcription	Fetal Brain Female	brain
24	chr15:43936000-43940200	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:43936000-43940200	Weak transcription	Right Ventricle	heart
26	chr15:43936000-43951800	Weak transcription	Primary T cells from cord blood	blood
27	chr15:43936000-43956000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:43936400-43940200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:43936400-43940600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:43936400-43943800	Weak transcription	Fetal Brain Male	brain
31	chr15:43937200-43941000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:43937200-43943200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr15:43937400-43939800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:43937400-43942000	Strong transcription	Fetal Intestine Small	intestine
35	chr15:43937600-43940800	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:43937600-43942000	Weak transcription	Liver	Liver
37	chr15:43937600-43943400	Weak transcription	Adipose Nuclei	Adipose
38	chr15:43937600-43943400	Weak transcription	Brain Germinal Matrix	brain
39	chr15:43937800-43941600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:43937800-43942000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:43937800-43943200	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:43938000-43941600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:43938200-43943600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr15:43938400-43941600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:43938400-43942200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:43938600-43939800	Enhancers	GM12878-XiMat	blood
47	chr15:43938800-43940400	Weak transcription	Colonic Mucosa	Colon
48	chr15:43938800-43940600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:43938800-43941200	Strong transcription	Fetal Intestine Large	intestine
50	chr15:43939000-43941400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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