Variant report

Variant	rs2439831
Chromosome Location	chr15:43784475-43784476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43783239..43787260-chr15:43801022..43804758,8	K562	blood:
2	chr15:43776347..43778710-chr15:43783063..43784635,2	K562	blood:
3	15:43782117-43785993..15:44001645-44015047	GM12878	blood:
4	chr15:43784031..43792065-chr15:43801022..43804774,10	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPIP5K1-3	chr15:43784471-43784666	NONHSAT042085

Variant related genes	Relation type
ENSG00000242866	Chromatin interaction
ENSG00000166963	Chromatin interaction
ENSG00000238494	Chromatin interaction
ENSG00000166763	Chromatin interaction
ENSG00000067369	Chromatin interaction

Extended variants
information (count: 210 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs101094	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518820	0.88[CEU][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs1058298	0.85[ASN][1000 genomes]
rs1060939	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs1079309	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1095386	0.88[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs11858640	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323999	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12324572	0.81[AMR][1000 genomes]
rs12324584	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12437725	0.81[EUR][1000 genomes]
rs12443102	0.88[CEU][hapmap]
rs1549525	0.88[CEU][hapmap];0.87[GIH][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap]
rs16957627	0.81[AMR][1000 genomes]
rs16957630	0.81[AMR][1000 genomes]
rs16957632	0.81[AMR][1000 genomes]
rs1814538	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837959	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs1837960	0.88[ASW][hapmap];0.92[GIH][hapmap];0.86[LWK][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs1869258	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2242068	0.88[AFR][1000 genomes]
rs2242069	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2243434	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2244981	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2245054	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245176	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245664	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2245715	0.83[ASW][hapmap];0.88[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2245780	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245785	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2245790	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245908	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2249952	0.98[ASN][1000 genomes]
rs2250743	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2250750	0.97[ASN][1000 genomes]
rs2251538	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2251844	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2253268	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2253708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253807	0.96[ASN][1000 genomes]
rs2254321	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2254325	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255042	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2255051	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2255383	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255410	0.95[JPT][hapmap]
rs2255440	0.88[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2255663	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs2256764	0.86[AMR][1000 genomes]
rs2260160	0.88[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs2264049	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264050	1.00[ASN][1000 genomes]
rs2264239	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2264248	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2264876	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278859	0.86[CEU][hapmap]
rs2278860	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2412778	0.83[AMR][1000 genomes]
rs2412779	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2412780	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2412782	0.86[AMR][1000 genomes]
rs2439	0.88[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs2439832	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2439833	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2439834	0.89[AMR][1000 genomes]
rs2439836	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2439841	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2439845	0.96[ASN][1000 genomes]
rs2439846	1.00[ASN][1000 genomes]
rs2439848	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2439850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2444028	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2444029	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2444032	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444036	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs2444037	0.86[ASN][1000 genomes]
rs2444244	0.87[AMR][1000 genomes]
rs2444247	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2444249	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2444250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444251	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2447193	0.88[CEU][hapmap]
rs2447196	0.88[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs2447208	0.88[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs2447211	0.88[CEU][hapmap]
rs2467733	0.88[AFR][1000 genomes]
rs2467736	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467737	0.99[ASN][1000 genomes]
rs2467738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2467739	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467740	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467741	0.99[ASN][1000 genomes]
rs2467742	1.00[ASN][1000 genomes]
rs2467743	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467745	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2467746	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2470121	0.88[CEU][hapmap]
rs2470130	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2470131	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2584694	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2584702	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2584706	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2584725	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2584726	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2584727	0.95[ASN][1000 genomes]
rs2601014	0.89[AMR][1000 genomes]
rs2602141	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2614811	0.88[CEU][hapmap]
rs28415933	0.81[AMR][1000 genomes]
rs28461955	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28495368	0.88[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs28628574	0.91[EUR][1000 genomes]
rs28649346	0.99[ASN][1000 genomes]
rs28666488	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729853	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2899082	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2915788	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2920781	0.88[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs2924368	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2924369	1.00[ASN][1000 genomes]
rs2927072	0.84[TSI][hapmap]
rs3097773	0.88[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs3101443	0.88[CEU][hapmap]
rs3213990	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs3213991	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3742969	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap]
rs3742971	0.88[CEU][hapmap];0.89[GIH][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap]
rs3809481	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs4075674	1.00[CEU][hapmap];0.97[GIH][hapmap];0.90[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes]
rs45585139	0.82[AMR][1000 genomes]
rs4583210	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs471229	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475486	0.85[EUR][1000 genomes]
rs478104	0.88[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs480108	0.95[JPT][hapmap]
rs483724	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484029	0.88[CEU][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap]
rs486301	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs488756	0.81[GIH][hapmap];0.84[MKK][hapmap];0.80[TSI][hapmap]
rs493377	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs495175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs496584	0.88[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs506120	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs509306	0.98[ASN][1000 genomes]
rs518288	1.00[ASN][1000 genomes]
rs523156	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs524417	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524527	0.88[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs526083	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs526450	0.88[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs527921	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs529611	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs536313	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs537115	0.94[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs542898	0.97[ASN][1000 genomes]
rs544122	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs548704	0.94[ASN][1000 genomes]
rs550239	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs558656	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs560191	1.00[ASN][1000 genomes]
rs561863	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565007	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs572837	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs6493085	0.88[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes]
rs6493087	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs6493088	0.83[AMR][1000 genomes]
rs689596	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs689616	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689647	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs689693	0.88[ASN][1000 genomes]
rs689754	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs689767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs689781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs689797	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs689816	0.88[ASN][1000 genomes]
rs689826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs689883	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs690002	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs690012	0.97[ASN][1000 genomes]
rs690038	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs690263	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs690276	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs690316	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs690367	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs690436	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs690446	1.00[ASN][1000 genomes]
rs690466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs690472	1.00[ASN][1000 genomes]
rs690512	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs693510	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs694725	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs694985	1.00[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7163245	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7170489	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs7173487	1.00[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7497780	0.89[ASN][1000 genomes]
rs8039638	0.94[GIH][hapmap];0.86[LWK][hapmap];0.90[MKK][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes]
rs8039671	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8042868	0.88[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs825739	0.88[CEU][hapmap];0.82[YRI][hapmap]
rs825740	0.88[CEU][hapmap]
rs884704	1.00[GIH][hapmap];0.86[LWK][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs935901	0.87[CEU][hapmap]
rs9920763	0.81[EUR][1000 genomes]
rs999047	1.00[GIH][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs2439831	ADAL	cis	Artery Aorta	GTEx
rs2439831	ADAL	cis	Nerve Tibial	GTEx
rs2439831	ELL3	cis	lymphoblastoid	seeQTL
rs2439831	ADAL	cis	Skin Sun Exposed Lower leg	GTEx
rs2439831	ADAL	cis	Thyroid	GTEx
rs2439831	TGM5	cis	Lymphoblastoid	GTEx
rs2439831	ADAL	cis	multi-tissue	Pritchard
rs2439831	CKMT1A	cis	Esophagus Mucosa	GTEx
rs2439831	ADAL	cis	Esophagus Muscularis	GTEx
rs2439831	ADAL	cis	lung	GTEx
rs2439831	SERF2	cis	lymphoblastoid	seeQTL
rs2439831	ADAL	cis	Adipose Subcutaneous	GTEx
rs2439831	TGM5	cis	lymphoblastoid	seeQTL
rs2439831	ADAL	cis	Artery Tibial	GTEx
rs2439831	ELL3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43749200-43784600	Weak transcription	Stomach Mucosa	stomach
2	chr15:43760400-43784600	Weak transcription	Psoas Muscle	Psoas
3	chr15:43772400-43784600	Weak transcription	Pancreas	Pancrea
4	chr15:43772600-43784600	Weak transcription	Esophagus	oesophagus
5	chr15:43778000-43784600	Strong transcription	Placenta	Placenta
6	chr15:43780400-43784600	Weak transcription	Lung	lung
7	chr15:43780600-43784600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:43780600-43784600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:43780600-43784600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:43780600-43784800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:43781000-43784600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:43781000-43784600	Weak transcription	Right Ventricle	heart
13	chr15:43781800-43784600	Weak transcription	Left Ventricle	heart
14	chr15:43783000-43784600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:43783600-43784600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
16	chr15:43783800-43784600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr15:43784000-43784600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:43784000-43784600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:43784000-43784600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr15:43784000-43784600	Transcr. at gene 5' and 3'	Brain Inferior Temporal Lobe	brain
21	chr15:43784000-43784600	Transcr. at gene 5' and 3'	Fetal Brain Male	brain
22	chr15:43784000-43784600	Enhancers	Gastric	stomach
23	chr15:43784000-43784600	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
24	chr15:43784000-43784600	Enhancers	HepG2	liver
25	chr15:43784000-43784800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr15:43784000-43784800	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr15:43784000-43784800	Enhancers	Spleen	Spleen
28	chr15:43784000-43785000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:43784000-43785800	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr15:43784000-43786000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:43784200-43784600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:43784200-43784600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:43784200-43784600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr15:43784200-43784600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr15:43784200-43784600	Flanking Active TSS	NHDF-Ad	bronchial
36	chr15:43784200-43784800	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr15:43784200-43784800	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr15:43784200-43784800	Flanking Active TSS	Fetal Heart	heart
39	chr15:43784200-43784800	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr15:43784200-43784800	Flanking Active TSS	NH-A	brain
41	chr15:43784200-43785000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:43784200-43785600	Active TSS	GM12878-XiMat	blood
43	chr15:43784200-43785800	Active TSS	H1 Cell Line	embryonic stem cell
44	chr15:43784200-43786000	Active TSS	H9 Cell Line	embryonic stem cell
45	chr15:43784200-43786000	Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr15:43784200-43786000	Active TSS	Right Atrium	heart
47	chr15:43784400-43784600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:43784400-43784600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr15:43784400-43784600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:43784400-43784600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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