Variant report

Variant	rs542898
Chromosome Location	chr15:43719392-43719393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43718022..43720198-chr15:43725663..43727531,2	K562	blood:

Extended variants
information (count: 171 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:169)

rs_ID	r²[population]
rs101094	0.97[ASN][1000 genomes]
rs1058298	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1060939	1.00[ASW][hapmap];0.91[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1079309	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070399	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1133395	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11637572	0.84[CEU][hapmap];0.95[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11853991	0.83[MEX][hapmap]
rs11858640	0.97[ASN][1000 genomes]
rs12102205	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12905772	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1814323	0.87[MEX][hapmap]
rs1814538	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1869258	0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2012467	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2242069	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2244746	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2244981	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2245054	0.97[ASN][1000 genomes]
rs2245176	0.97[ASN][1000 genomes]
rs2245664	0.95[ASN][1000 genomes]
rs2245715	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs2245780	0.97[ASN][1000 genomes]
rs2245785	0.90[ASN][1000 genomes]
rs2245790	0.97[ASN][1000 genomes]
rs2245908	0.96[ASN][1000 genomes]
rs2249952	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2250743	0.95[ASN][1000 genomes]
rs2250750	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2251538	0.97[ASN][1000 genomes]
rs2253268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2253708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2253807	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2254321	0.96[ASN][1000 genomes]
rs2254325	0.95[ASN][1000 genomes]
rs2255383	0.97[ASN][1000 genomes]
rs2255410	0.91[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs2255440	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs2255663	0.91[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2264049	0.96[ASN][1000 genomes]
rs2264050	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2264239	0.97[ASN][1000 genomes]
rs2264248	0.94[ASN][1000 genomes]
rs2264876	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2278856	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2278857	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2412781	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2439831	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2439832	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2439833	0.86[ASN][1000 genomes]
rs2439836	0.96[ASN][1000 genomes]
rs2439839	0.82[AMR][1000 genomes]
rs2439841	0.95[ASN][1000 genomes]
rs2439845	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2439846	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2439848	0.97[ASN][1000 genomes]
rs2439850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2444028	0.98[ASN][1000 genomes]
rs2444029	0.97[ASN][1000 genomes]
rs2444032	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2444037	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2444247	0.98[ASN][1000 genomes]
rs2444249	0.94[ASN][1000 genomes]
rs2444250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2444251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2467736	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2467737	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2467738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2467739	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2467740	0.97[ASN][1000 genomes]
rs2467741	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2467742	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2467743	0.97[ASN][1000 genomes]
rs2467745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2584694	0.96[ASN][1000 genomes]
rs2584700	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2584701	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2584706	0.97[ASN][1000 genomes]
rs2584725	0.91[ASN][1000 genomes]
rs2584726	0.99[ASN][1000 genomes]
rs2584727	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2602141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28649346	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28666488	0.97[ASN][1000 genomes]
rs28702649	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2924368	0.95[ASN][1000 genomes]
rs2924369	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3097773	0.90[JPT][hapmap]
rs3809482	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4296223	1.00[CEU][hapmap];0.80[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4401024	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4547312	0.96[CEU][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs471122	0.83[MEX][hapmap]
rs471229	0.98[ASN][1000 genomes]
rs478028	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs480108	0.91[CEU][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs483724	0.97[ASN][1000 genomes]
rs493177	0.87[MEX][hapmap]
rs493377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs496584	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs504417	0.87[MEX][hapmap]
rs506120	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs507178	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs509306	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs510108	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs512628	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs518288	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs523156	0.87[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs524417	0.97[ASN][1000 genomes]
rs526083	0.90[ASN][1000 genomes]
rs529611	0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs530683	0.83[MEX][hapmap]
rs531910	0.83[MEX][hapmap]
rs536313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs537115	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs538238	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.83[TSI][hapmap]
rs546722	0.87[MEX][hapmap]
rs548704	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550239	0.99[ASN][1000 genomes]
rs552701	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs555001	0.83[MEX][hapmap]
rs558656	0.99[ASN][1000 genomes]
rs560191	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs561863	0.97[ASN][1000 genomes]
rs565007	1.00[ASN][1000 genomes]
rs570933	0.82[AMR][1000 genomes]
rs572837	1.00[ASW][hapmap];0.91[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs573615	1.00[ASW][hapmap];0.91[CEU][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs574065	0.83[MEX][hapmap]
rs576557	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6493083	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493084	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493086	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs689596	0.96[ASN][1000 genomes]
rs689616	0.97[ASN][1000 genomes]
rs689647	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs689693	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs689754	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs689767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs689781	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs689797	0.91[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs689816	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs689826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs689835	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs690002	0.90[ASN][1000 genomes]
rs690012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs690038	0.95[ASN][1000 genomes]
rs690263	0.96[ASN][1000 genomes]
rs690276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs690316	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs690367	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690436	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs690446	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs690472	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs690512	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs694725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs694985	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs7163288	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs7166812	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7167882	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7170152	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7172374	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7497780	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8039671	0.82[ASN][1000 genomes]
rs8042688	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9920879	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs542898	ZSCAN29	cis	multi-tissue	Pritchard
rs542898	ADAL	cis	Nerve Tibial	GTEx
rs542898	AC011330.5	cis	Artery Tibial	GTEx
rs542898	ZSCAN29	cis	Thyroid	GTEx
rs542898	STRCP1	cis	Esophagus Muscularis	GTEx
rs542898	ZSCAN29	cis	lymphoblastoid	seeQTL
rs542898	AC011330.5	cis	Thyroid	GTEx
rs542898	CKMT1A	cis	Esophagus Mucosa	GTEx
rs542898	TGM5	cis	multi-tissue	Pritchard
rs542898	ELL3	cis	multi-tissue	Pritchard
rs542898	TGM5	cis	lymphoblastoid	seeQTL
rs542898	TGM7	cis	Esophagus Mucosa	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43665000-43730000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:43668200-43732800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:43675600-43744400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:43682800-43720800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:43682800-43727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:43683400-43732200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:43685000-43720400	Strong transcription	Fetal Brain Female	brain
8	chr15:43686000-43720600	Strong transcription	Brain Germinal Matrix	brain
9	chr15:43686000-43727000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:43686600-43720400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr15:43686600-43720400	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:43686600-43726000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr15:43686600-43733200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:43686600-43733800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:43686800-43725400	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:43686800-43725600	Strong transcription	Osteobl	bone
17	chr15:43686800-43733400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:43687000-43725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:43687000-43732200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:43687200-43733400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:43687600-43731600	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:43689200-43737200	Weak transcription	Stomach Mucosa	stomach
23	chr15:43699200-43720400	Strong transcription	Fetal Stomach	stomach
24	chr15:43700000-43748400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:43703200-43739800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:43703600-43731400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:43703800-43724800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:43704200-43727200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:43705400-43720800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:43709000-43719400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:43709200-43724400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:43709400-43741600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:43709800-43723600	Weak transcription	Fetal Brain Male	brain
34	chr15:43710600-43720400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:43711000-43720800	Strong transcription	Adipose Nuclei	Adipose
36	chr15:43711400-43720800	Strong transcription	Dnd41	blood
37	chr15:43711400-43726400	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr15:43711600-43723000	Weak transcription	Psoas Muscle	Psoas
39	chr15:43712200-43720600	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr15:43712400-43720600	Strong transcription	Placenta	Placenta
41	chr15:43712400-43721000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr15:43713200-43729600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:43713600-43719400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:43713600-43719400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:43713600-43750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:43713800-43720000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:43713800-43722000	Weak transcription	Fetal Heart	heart
48	chr15:43714000-43748200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:43714200-43719400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:43714200-43719800	Weak transcription	Gastric	stomach

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