Variant report

Variant	rs1869258
Chromosome Location	chr15:43803621-43803622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:43801889-43804027	NB4	blood:	n/a	chr15:43802987-43802997
2	POLR2A	chr15:43801796-43803795	K562	blood:	n/a	n/a
3	MAX	chr15:43802311-43804023	K562	blood:	n/a	chr15:43802987-43802997
4	CTCF	chr15:43803573-43804165	A549	lung:	n/a	chr15:43803948-43803961
5	RCOR1	chr15:43801818-43804089	K562	blood:	n/a	n/a
6	CTCF	chr15:43801842-43804325	SK-N-SH	brain:	n/a	chr15:43803948-43803961 chr15:43803106-43803119
7	MAFF	chr15:43803451-43803698	HepG2	liver:	n/a	n/a
8	POLR2A	chr15:43802268-43804182	H1-neurons	neurons:	n/a	n/a
9	SIN3A	chr15:43802168-43804075	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr15:43803082-43804126	H1-hESC	embryonic stem cell:	n/a	chr15:43803950-43803964 chr15:43803946-43803958
11	MXI1	chr15:43802552-43803627	H1-hESC	embryonic stem cell:	n/a	n/a
12	CHD2	chr15:43802489-43803635	K562	blood:	n/a	chr15:43803049-43803059
13	GATA2	chr15:43802414-43803895	SH-SY5Y	brain:	n/a	chr15:43803764-43803772
14	MAX	chr15:43802474-43803630	Hela-S3	cervix:	n/a	chr15:43802987-43802997
15	POLR2A	chr15:43802243-43803636	SK-N-MC	brain:	n/a	n/a
16	MAX	chr15:43801195-43804108	NB4	blood:	n/a	chr15:43802987-43802997 chr15:43801254-43801263
17	TCF7L2	chr15:43802844-43803626	HCT-116	colon:	n/a	n/a
18	MXI1	chr15:43802453-43803985	HepG2	liver:	n/a	n/a
19	MXI1	chr15:43802413-43804417	IMR90	lung:	n/a	n/a
20	CTCF	chr15:43803600-43803750	GM12871	blood:	n/a	n/a
21	HMGN3	chr15:43802540-43803630	K562	blood:	n/a	n/a
22	JUND	chr15:43801920-43804109	K562	blood:	n/a	n/a
23	SMARCB1	chr15:43802612-43804084	Hela-S3	cervix:	n/a	n/a
24	RCOR1	chr15:43802848-43803660	HepG2	liver:	n/a	n/a
25	TAF1	chr15:43802509-43804102	H1-neurons	neurons:	n/a	n/a
26	ELF1	chr15:43802456-43803768	GM12878	blood:	n/a	n/a
27	MXI1	chr15:43802479-43803630	Hela-S3	cervix:	n/a	n/a
28	MAX	chr15:43802399-43803686	SK-N-SH	brain:	n/a	chr15:43802987-43802997
29	RCOR1	chr15:43802373-43803989	K562	blood:	n/a	n/a
30	MAX	chr15:43802402-43804056	H1-hESC	embryonic stem cell:	n/a	chr15:43802987-43802997
31	SIN3AK20	chr15:43802723-43803695	H1-hESC	embryonic stem cell:	n/a	n/a
32	RAD21	chr15:43801795-43804382	SK-N-SH	brain:	n/a	chr15:43803950-43803964 chr15:43803946-43803958
33	MAX	chr15:43802616-43803677	ECC-1	luminal epithelium:	n/a	chr15:43802987-43802997
34	ZNF143	chr15:43802445-43803695	H1-hESC	embryonic stem cell:	n/a	chr15:43803103-43803121
35	REST	chr15:43802087-43804392	H1-neurons	neurons:	n/a	n/a
36	RAD21	chr15:43803613-43804138	MCF-7	breast:	n/a	chr15:43803950-43803964 chr15:43803946-43803958
37	GTF2F1	chr15:43802491-43803638	K562	blood:	n/a	n/a
38	RFX5	chr15:43803118-43803936	H1-hESC	embryonic stem cell:	n/a	n/a
39	RCOR1	chr15:43802460-43803686	Hela-S3	cervix:	n/a	n/a
40	CTBP2	chr15:43802507-43803985	H1-hESC	embryonic stem cell:	n/a	n/a
41	MXI1	chr15:43800817-43804506	SK-N-SH	brain:	n/a	chr15:43801252-43801267 chr15:43801254-43801269
42	POLR2A	chr15:43802283-43804197	H1-neurons	neurons:	n/a	n/a
43	MAZ	chr15:43802491-43803644	Hela-S3	cervix:	n/a	chr15:43802987-43802997
44	SMC3	chr15:43802394-43804101	Hela-S3	cervix:	n/a	n/a
45	SMARCC1	chr15:43802498-43803763	Hela-S3	cervix:	n/a	n/a
46	MAX	chr15:43802403-43803676	H1-hESC	embryonic stem cell:	n/a	chr15:43802987-43802997
47	TCF7L2	chr15:43802790-43803645	PANC-1	pancreas:	n/a	n/a
48	MAX	chr15:43802594-43803783	H1-hESC	embryonic stem cell:	n/a	chr15:43802987-43802997

No.	Distal block	Cell Line	Cell type
1	chr15:43784031..43792065-chr15:43801022..43804774,10	K562	blood:
2	chr15:43803434..43805458-chr15:43818001..43820886,2	K562	blood:
3	chr15:43783239..43787260-chr15:43801022..43804758,8	K562	blood:
4	chr15:43784964..43786568-chr15:43801519..43804251,2	MCF-7	breast:
5	15:43802874-43806906..15:44001645-44015047	Hela-S3	cervix:
6	chr15:43729891..43732204-chr15:43801594..43804283,2	K562	blood:
7	chr15:43621078..43623590-chr15:43801793..43804270,2	MCF-7	breast:
8	chr15:43803384..43806357-chr15:43806530..43809692,3	MCF-7	breast:

Variant related genes	Relation type
TP53BP1	TF binding region
ENSG00000242866	Chromatin interaction
ENSG00000238494	Chromatin interaction
ENSG00000168806	Chromatin interaction
ENSG00000168803	Chromatin interaction
ENSG00000067369	Chromatin interaction
ENSG00000166763	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs101094	0.87[ASN][1000 genomes]
rs1060939	0.86[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1079309	0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11637572	0.81[AFR][1000 genomes]
rs11858640	0.87[ASN][1000 genomes]
rs12905772	0.91[CEU][hapmap]
rs1814538	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2012467	0.81[AFR][1000 genomes]
rs2242069	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2244981	0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2245054	0.87[ASN][1000 genomes]
rs2245176	0.87[ASN][1000 genomes]
rs2245664	0.85[ASN][1000 genomes]
rs2245715	0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2245780	0.87[ASN][1000 genomes]
rs2245790	0.87[ASN][1000 genomes]
rs2245908	0.85[ASN][1000 genomes]
rs2249952	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2250743	0.85[ASN][1000 genomes]
rs2250750	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2251538	0.87[ASN][1000 genomes]
rs2251844	0.83[ASN][1000 genomes]
rs2253268	0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2253708	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2253807	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2254321	0.82[ASN][1000 genomes]
rs2254325	0.81[ASN][1000 genomes]
rs2254927	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2255042	0.85[ASN][1000 genomes]
rs2255051	0.81[ASN][1000 genomes]
rs2255383	0.87[ASN][1000 genomes]
rs2255410	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2255440	0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2255663	1.00[CEU][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2264049	0.85[ASN][1000 genomes]
rs2264050	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2264239	0.87[ASN][1000 genomes]
rs2264248	0.83[ASN][1000 genomes]
rs2264876	0.91[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2278857	0.86[ASW][hapmap];0.87[CEU][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs2412781	0.86[ASW][hapmap];0.91[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes]
rs2439831	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2439832	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2439836	0.86[ASN][1000 genomes]
rs2439839	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2439841	0.83[ASN][1000 genomes]
rs2439843	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2439845	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2439846	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2439848	0.87[ASN][1000 genomes]
rs2439850	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2444028	0.86[ASN][1000 genomes]
rs2444029	0.85[ASN][1000 genomes]
rs2444032	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2444244	0.83[ASN][1000 genomes]
rs2444247	0.86[ASN][1000 genomes]
rs2444249	0.84[ASN][1000 genomes]
rs2444250	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2444251	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2467736	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2467737	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2467738	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2467739	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2467740	0.87[ASN][1000 genomes]
rs2467741	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2467742	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2467743	0.87[ASN][1000 genomes]
rs2467745	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2470130	0.85[ASN][1000 genomes]
rs2470131	0.85[ASN][1000 genomes]
rs2584694	0.81[ASN][1000 genomes]
rs2584700	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2584706	0.87[ASN][1000 genomes]
rs2584725	0.93[ASN][1000 genomes]
rs2584726	0.85[ASN][1000 genomes]
rs2584727	0.82[ASN][1000 genomes]
rs2602141	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2614832	1.00[YRI][hapmap]
rs28649346	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28666488	0.87[ASN][1000 genomes]
rs2915788	0.81[ASN][1000 genomes]
rs2924368	0.85[ASN][1000 genomes]
rs2924369	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2927071	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs3097773	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs3809482	0.86[ASW][hapmap];0.91[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes]
rs4296223	0.91[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs4547312	0.87[CEU][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs471229	0.86[ASN][1000 genomes]
rs475486	0.81[ASN][1000 genomes]
rs478028	0.82[CEU][hapmap]
rs480108	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs483724	0.87[ASN][1000 genomes]
rs486301	0.83[ASN][1000 genomes]
rs493377	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs495175	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs496584	0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs506120	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs507178	0.82[CEU][hapmap]
rs509306	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs518288	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs523156	0.96[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs524417	0.87[ASN][1000 genomes]
rs526083	0.80[ASN][1000 genomes]
rs529611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536313	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs537115	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs542898	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs548704	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550239	0.85[ASN][1000 genomes]
rs558656	0.85[ASN][1000 genomes]
rs560191	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs561863	0.87[ASN][1000 genomes]
rs565007	0.84[ASN][1000 genomes]
rs570933	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs572837	0.86[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs573615	0.86[ASW][hapmap];0.83[CEU][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap]
rs6493083	0.86[ASW][hapmap];0.91[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap]
rs689596	0.85[ASN][1000 genomes]
rs689616	0.87[ASN][1000 genomes]
rs689647	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs689693	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs689754	0.86[CHB][hapmap]
rs689767	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs689781	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs689797	1.00[CEU][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs689816	0.82[AMR][1000 genomes]
rs689826	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs689835	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs689883	0.86[ASN][1000 genomes]
rs690012	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs690038	0.81[ASN][1000 genomes]
rs690263	0.81[ASN][1000 genomes]
rs690276	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs690316	0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs690367	0.86[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs690436	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs690446	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs690466	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs690472	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs690512	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs693510	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs694725	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs694985	0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7163288	0.86[ASW][hapmap];0.91[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs7167882	0.84[AMR][1000 genomes]
rs7497780	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9920879	0.86[ASW][hapmap];0.91[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv515877	chr15:43802024-43818052	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518707	chr15:43802024-43826557	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs1869258	TGM7	cis	Esophagus Mucosa	GTEx
rs1869258	TGM5	cis	multi-tissue	Pritchard
rs1869258	ZSCAN29	cis	multi-tissue	Pritchard
rs1869258	AC011330.5	cis	Thyroid	GTEx
rs1869258	AC011330.5	cis	Artery Tibial	GTEx
rs1869258	ZSCAN29	cis	Thyroid	GTEx
rs1869258	CKMT1A	cis	Esophagus Mucosa	GTEx
rs1869258	TGM5	cis	lymphoblastoid	seeQTL
rs1869258	STRCP1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43801000-43804200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:43802000-43803800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr15:43802200-43803800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:43802200-43803800	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr15:43802400-43803800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:43802400-43806400	Weak transcription	Small Intestine	intestine
7	chr15:43802600-43803800	Active TSS	Gastric	stomach
8	chr15:43803000-43804200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:43803200-43803800	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr15:43803200-43803800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr15:43803200-43803800	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr15:43803200-43803800	Flanking Active TSS	Right Atrium	heart
13	chr15:43803200-43803800	Flanking Active TSS	Hela-S3	cervix
14	chr15:43803200-43803800	Flanking Active TSS	HSMM	muscle
15	chr15:43803200-43803800	Flanking Active TSS	K562	blood
16	chr15:43803200-43804000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr15:43803200-43804000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr15:43803200-43804000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:43803200-43804000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:43803200-43804000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr15:43803200-43804000	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr15:43803200-43804000	Flanking Active TSS	Fetal Muscle Trunk	muscle
23	chr15:43803200-43804000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr15:43803200-43804000	Flanking Active TSS	Osteobl	bone
25	chr15:43803200-43804200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr15:43803200-43804200	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr15:43803200-43804200	Flanking Active TSS	Dnd41	blood
28	chr15:43803400-43803800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr15:43803400-43803800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:43803400-43803800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:43803400-43803800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:43803400-43803800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
33	chr15:43803400-43803800	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr15:43803400-43803800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:43803400-43803800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr15:43803400-43803800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr15:43803400-43803800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:43803400-43803800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:43803400-43803800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr15:43803400-43803800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr15:43803400-43803800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr15:43803400-43803800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:43803400-43803800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:43803400-43803800	Enhancers	Esophagus	oesophagus
45	chr15:43803400-43803800	Flanking Active TSS	Fetal Heart	heart
46	chr15:43803400-43803800	Flanking Active TSS	Fetal Kidney	kidney
47	chr15:43803400-43803800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
48	chr15:43803400-43803800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
49	chr15:43803400-43803800	Flanking Active TSS	Left Ventricle	heart
50	chr15:43803400-43803800	Flanking Active TSS	Right Ventricle	heart

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