Variant report

Variant	rs506120
Chromosome Location	chr15:43802024-43802025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr15:43801970-43803494	K562	blood:	n/a	n/a
2	POLR2A	chr15:43801831-43803564	U87	brain:	n/a	n/a
3	CTCF	chr15:43802000-43802290	NHDF-neo	bronchial:	n/a	n/a
4	MYC	chr15:43801889-43804027	NB4	blood:	n/a	chr15:43802987-43802997
5	MAZ	chr15:43801988-43803525	K562	blood:	n/a	chr15:43802987-43802997
6	POLR2A	chr15:43801796-43803795	K562	blood:	n/a	n/a
7	EP300	chr15:43802019-43803267	K562	blood:	n/a	chr15:43803049-43803065
8	UBTF	chr15:43801956-43803428	K562	blood:	n/a	n/a
9	RCOR1	chr15:43801818-43804089	K562	blood:	n/a	n/a
10	CTCF	chr15:43801842-43804325	SK-N-SH	brain:	n/a	chr15:43803948-43803961 chr15:43803106-43803119
11	BACH1	chr15:43802009-43802176	K562	blood:	n/a	n/a
12	POLR2A	chr15:43801825-43803570	U87	brain:	n/a	n/a
13	POLR2A	chr15:43801837-43803537	U87	brain:	n/a	n/a
14	TEAD4	chr15:43801892-43803529	K562	blood:	n/a	n/a
15	MAX	chr15:43801195-43804108	NB4	blood:	n/a	chr15:43802987-43802997 chr15:43801254-43801263
16	MAX	chr15:43801974-43803316	K562	blood:	n/a	chr15:43802987-43802997
17	JUND	chr15:43801920-43804109	K562	blood:	n/a	n/a
18	TBP	chr15:43801853-43803429	K562	blood:	n/a	n/a
19	CTCF	chr15:43801940-43802090	AG04449	skin:	n/a	n/a
20	POLR2A	chr15:43801780-43803425	SK-N-SH	brain:	n/a	n/a
21	ZNF384	chr15:43801935-43803390	K562	blood:	n/a	n/a
22	RAD21	chr15:43801795-43804382	SK-N-SH	brain:	n/a	chr15:43803950-43803964 chr15:43803946-43803958
23	UBTF	chr15:43802004-43802171	K562	blood:	n/a	n/a
24	MXI1	chr15:43800817-43804506	SK-N-SH	brain:	n/a	chr15:43801252-43801267 chr15:43801254-43801269
25	POLR2A	chr15:43801821-43803537	U87	brain:	n/a	n/a
26	CTCF	chr15:43802020-43802170	AG04450	lung:	n/a	n/a
27	POLR2A	chr15:43801816-43803494	K562	blood:	n/a	n/a
28	CTCF	chr15:43801980-43802130	BJ	skin:	n/a	n/a
29	TBL1XR1	chr15:43801989-43802176	K562	blood:	n/a	n/a
30	MYC	chr15:43801840-43803524	K562	blood:	n/a	chr15:43802987-43802997

No.	Distal block	Cell Line	Cell type
1	chr15:43784031..43792065-chr15:43801022..43804774,10	K562	blood:
2	chr15:43662206..43664068-chr15:43799780..43802571,2	K562	blood:
3	chr15:43801353..43803228-chr15:44084383..44086214,2	K562	blood:
4	15:43792489-43802874..15:44074989-44078735	K562	blood:
5	chr15:43783239..43787260-chr15:43801022..43804758,8	K562	blood:
6	chr15:43784964..43786568-chr15:43801519..43804251,2	MCF-7	breast:
7	chr15:43800445..43802853-chr15:44084383..44085884,2	K562	blood:
8	15:43792489-43802874..15:44001645-44015047	GM12878	blood:
9	chr15:43770091..43773050-chr15:43800972..43802539,2	K562	blood:
10	chr15:43729891..43732204-chr15:43801594..43804283,2	K562	blood:
11	chr15:43621078..43623590-chr15:43801793..43804270,2	MCF-7	breast:

Variant related genes	Relation type
MAP1A	TF binding region
ENSG00000166763	Chromatin interaction
ENSG00000140265	Chromatin interaction
ENSG00000168803	Chromatin interaction
ENSG00000221792	Chromatin interaction
ENSG00000238494	Chromatin interaction
ENSG00000168806	Chromatin interaction
ENSG00000268488	Chromatin interaction
ENSG00000137822	Chromatin interaction
ENSG00000140264	Chromatin interaction
ENSG00000067369	Chromatin interaction
ENSG00000242866	Chromatin interaction

Extended variants
information (count: 142 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs101094	0.88[ASN][1000 genomes]
rs1060939	0.91[CEU][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1079309	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11858640	0.88[ASN][1000 genomes]
rs12905772	0.91[CEU][hapmap]
rs1814538	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1869258	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2242069	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2244981	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2245054	0.88[ASN][1000 genomes]
rs2245176	0.88[ASN][1000 genomes]
rs2245664	0.86[ASN][1000 genomes]
rs2245715	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs2245780	0.88[ASN][1000 genomes]
rs2245785	0.80[ASN][1000 genomes]
rs2245790	0.88[ASN][1000 genomes]
rs2245908	0.86[ASN][1000 genomes]
rs2249952	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2250743	0.86[ASN][1000 genomes]
rs2250750	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2251538	0.88[ASN][1000 genomes]
rs2253268	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253708	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2253807	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2254321	0.84[ASN][1000 genomes]
rs2254325	0.82[ASN][1000 genomes]
rs2254927	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2255383	0.88[ASN][1000 genomes]
rs2255410	0.91[CEU][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2255440	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs2255663	0.91[CEU][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2264049	0.87[ASN][1000 genomes]
rs2264050	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2264239	0.88[ASN][1000 genomes]
rs2264248	0.85[ASN][1000 genomes]
rs2264876	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2278857	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs2412781	0.91[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes]
rs2439831	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2439832	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2439836	0.88[ASN][1000 genomes]
rs2439839	0.87[AMR][1000 genomes]
rs2439841	0.85[ASN][1000 genomes]
rs2439843	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2439845	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2439846	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2439848	0.88[ASN][1000 genomes]
rs2439850	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2444028	0.88[ASN][1000 genomes]
rs2444029	0.87[ASN][1000 genomes]
rs2444032	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2444247	0.88[ASN][1000 genomes]
rs2444249	0.86[ASN][1000 genomes]
rs2444250	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2444251	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2467736	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2467737	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2467738	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2467739	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2467740	0.88[ASN][1000 genomes]
rs2467741	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2467742	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2467743	0.88[ASN][1000 genomes]
rs2467745	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2584694	0.83[ASN][1000 genomes]
rs2584706	0.88[ASN][1000 genomes]
rs2584725	0.94[ASN][1000 genomes]
rs2584726	0.86[ASN][1000 genomes]
rs2584727	0.84[ASN][1000 genomes]
rs2602141	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28649346	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28666488	0.88[ASN][1000 genomes]
rs2924368	0.86[ASN][1000 genomes]
rs2924369	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2927071	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs3097773	0.91[JPT][hapmap]
rs3809482	0.91[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes]
rs4296223	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs4547312	0.89[ASW][hapmap];0.87[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs471229	0.88[ASN][1000 genomes]
rs478028	0.82[CEU][hapmap]
rs480108	0.91[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs483724	0.88[ASN][1000 genomes]
rs484029	0.83[CHB][hapmap]
rs493377	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs495175	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs496584	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs507178	0.82[CEU][hapmap]
rs509306	0.86[ASN][1000 genomes]
rs518288	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs523156	0.87[CEU][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs524417	0.88[ASN][1000 genomes]
rs526083	0.82[ASN][1000 genomes]
rs529611	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs536313	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs537115	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs542898	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs548704	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs550239	0.86[ASN][1000 genomes]
rs558656	0.86[ASN][1000 genomes]
rs560191	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs561863	0.88[ASN][1000 genomes]
rs565007	0.86[ASN][1000 genomes]
rs570933	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs572837	0.91[CEU][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs573615	0.83[CEU][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap]
rs6493083	0.91[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs689596	0.87[ASN][1000 genomes]
rs689616	0.88[ASN][1000 genomes]
rs689647	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs689693	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs689754	0.86[CHB][hapmap]
rs689767	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs689781	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs689797	0.91[CEU][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs689816	0.81[AMR][1000 genomes]
rs689826	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs689835	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs690012	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs690038	0.82[ASN][1000 genomes]
rs690263	0.83[ASN][1000 genomes]
rs690276	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs690316	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs690367	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs690436	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs690446	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs690466	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs690472	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs690512	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs693510	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs694725	0.89[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs694985	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs7163288	0.91[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs7167882	0.82[AMR][1000 genomes]
rs7497780	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9920879	0.91[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv515877	chr15:43802024-43818052	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518707	chr15:43802024-43826557	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs506120	ELL3	cis	multi-tissue	Pritchard
rs506120	AC011330.5	cis	Artery Tibial	GTEx
rs506120	STRCP1	cis	Esophagus Muscularis	GTEx
rs506120	TGM5	cis	lymphoblastoid	seeQTL
rs506120	TGM5	cis	multi-tissue	Pritchard
rs506120	AC011330.5	cis	Thyroid	GTEx
rs506120	ZSCAN29	cis	multi-tissue	Pritchard
rs506120	CKMT1A	cis	Esophagus Mucosa	GTEx
rs506120	ZSCAN29	cis	Thyroid	GTEx
rs506120	ADAL	cis	Nerve Tibial	GTEx

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43800600-43802200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:43800600-43802200	Enhancers	Left Ventricle	heart
3	chr15:43800800-43802200	Weak transcription	Small Intestine	intestine
4	chr15:43800800-43802400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:43800800-43802800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr15:43801000-43802200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:43801000-43802200	Flanking Active TSS	K562	blood
8	chr15:43801000-43802400	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr15:43801000-43802400	Flanking Active TSS	Fetal Brain Female	brain
10	chr15:43801000-43802600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:43801000-43802800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr15:43801000-43802800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr15:43801000-43804200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:43801200-43802200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:43801200-43802200	Enhancers	Fetal Intestine Large	intestine
16	chr15:43801200-43802200	Enhancers	Psoas Muscle	Psoas
17	chr15:43801200-43802400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr15:43801200-43802400	Enhancers	Fetal Intestine Small	intestine
19	chr15:43801400-43802200	Weak transcription	Right Atrium	heart
20	chr15:43801400-43802400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:43801400-43802400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr15:43801400-43802400	Enhancers	Placenta	Placenta
23	chr15:43801400-43802800	Flanking Active TSS	Dnd41	blood
24	chr15:43801600-43802200	Flanking Active TSS	Colon Smooth Muscle	Colon
25	chr15:43801600-43802600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr15:43801600-43802800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr15:43801600-43802800	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr15:43801600-43803000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:43801600-43803400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:43801600-43803600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:43801600-43803600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:43801800-43802200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
33	chr15:43801800-43802200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:43801800-43802200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:43801800-43802200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:43801800-43802200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr15:43801800-43802200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:43801800-43802200	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr15:43801800-43802200	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr15:43801800-43802200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr15:43801800-43802200	Enhancers	Brain Substantia Nigra	brain
42	chr15:43801800-43802200	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr15:43801800-43802200	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr15:43801800-43802200	Flanking Active TSS	HepG2	liver
45	chr15:43801800-43802200	Flanking Active TSS	HSMMtube	muscle
46	chr15:43801800-43802200	Flanking Active TSS	NHDF-Ad	bronchial
47	chr15:43801800-43802400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:43801800-43802400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:43801800-43802400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:43801800-43802400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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