Variant report

Variant	rs28636829
Chromosome Location	chr15:44116053-44116054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:44115808-44117112	IMR90	lung:	n/a	n/a
2	POLR2A	chr15:44115753-44117240	K562	blood:	n/a	n/a
3	ZNF274	chr15:44115984-44116408	K562	blood:	n/a	n/a
4	POLR2A	chr15:44115970-44116225	K562	blood:	n/a	n/a
5	CHD1	chr15:44115597-44117431	IMR90	lung:	n/a	n/a
6	CHD1	chr15:44116022-44116059	GM12878	blood:	n/a	n/a
7	WRNIP1	chr15:44115675-44116155	GM12878	blood:	n/a	n/a
8	POLR2A	chr15:44115738-44116065	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:44115999-44116147	GM12878	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:44089939..44094924-chr15:44115270..44119372,7	MCF-7	breast:
2	chr15:44089858..44095024-chr15:44113933..44120718,10	MCF-7	breast:
3	chr15:44082965..44094882-chr15:44108427..44121402,26	K562	blood:
4	chr15:44082407..44088245-chr15:44114276..44118984,12	MCF-7	breast:
5	chr15:44066351..44069155-chr15:44115292..44116970,2	MCF-7	breast:
6	chr15:44036424..44040091-chr15:44115436..44119319,5	K562	blood:
7	chr15:44068154..44070774-chr15:44115060..44118766,3	K562	blood:
8	chr15:44081892..44088686-chr15:44115665..44120334,7	MCF-7	breast:
9	chr15:44112442..44117510-chr15:44119138..44122295,7	K562	blood:
10	chr15:44067854..44069742-chr15:44115622..44117150,2	MCF-7	breast:

No data

Variant related genes	Relation type
WDR76	TF binding region
ENSG00000092470	Chromatin interaction
ENSG00000167004	Chromatin interaction
ENSG00000221792	Chromatin interaction
ENSG00000205771	Chromatin interaction
ENSG00000184716	Chromatin interaction
ENSG00000128886	Chromatin interaction
ENSG00000242028	Chromatin interaction
ENSG00000140264	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10163054	0.88[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10438303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs11070408	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs11070410	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11852767	0.88[EUR][1000 genomes]
rs11852840	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11856495	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11856795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12101756	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12440573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12441127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs12441861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12441984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442129	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12442297	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs12443102	0.88[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs12702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13329084	0.87[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs13380397	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16950562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs16963953	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16965120	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16977724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16977798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1965794	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1965795	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2228368	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2277531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2412810	0.81[EUR][1000 genomes]
rs2447193	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2447208	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap]
rs2447211	0.88[CEU][hapmap]
rs2467402	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs2467426	0.88[CEU][hapmap]
rs2470121	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28377539	0.85[ASN][1000 genomes]
rs28413704	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28413881	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28476182	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28509275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28513374	1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28519630	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28524541	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28531819	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28542007	0.81[EUR][1000 genomes]
rs28546844	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28564774	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28578398	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28583806	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28590651	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28595038	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28674750	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28678901	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28679673	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28684672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28687459	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28696802	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28699233	0.87[CEU][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs28707214	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28718261	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28780699	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28781888	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28823973	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28858500	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28866846	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28891769	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2920781	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs2927071	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]
rs2927072	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap]
rs2955969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3736180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3742982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3759791	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784275	0.87[CEU][hapmap];0.86[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs3816792	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3825783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap]
rs4597285	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4997480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs524908	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs533143	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs56008017	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56909447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs575082	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs60883262	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61390361	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62018952	0.92[ASN][1000 genomes]
rs667476	0.95[CHB][hapmap]
rs67541383	0.88[EUR][1000 genomes]
rs68079546	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688009	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs693919	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs694461	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7167976	0.90[GIH][hapmap];0.86[TSI][hapmap]
rs7168158	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7169322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7169382	0.98[ASN][1000 genomes]
rs7169988	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs7170167	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7170751	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7171750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs7174208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7175032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7175129	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7179388	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7180818	0.87[ASN][1000 genomes]
rs7181039	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7183809	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8023458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs8023508	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs8023696	0.81[EUR][1000 genomes]
rs8032649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8033995	1.00[CEU][hapmap]
rs8040839	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8042868	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs9944216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap];0.90[MKK][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9989313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv2758379	chr15:43823158-44148641	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	esv2760028	chr15:43823158-44148641	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv427960	chr15:43823158-44148641	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
8	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
9	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
10	nsv1036318	chr15:44053617-44160773	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
11	nsv1050263	chr15:44093927-44204047	Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	n/a

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs28636829	ADAL	cis	Nerve Tibial	GTEx
rs28636829	ADAL	cis	Stomach	GTEx
rs28636829	C15orf63	cis	lymphoblastoid	seeQTL
rs28636829	CKMT1A	cis	Esophagus Mucosa	GTEx
rs28636829	AC011330.5	cis	Esophagus Mucosa	GTEx
rs28636829	ADAL	cis	lung	GTEx
rs28636829	ELL3	Cis_1M	lymphoblastoid	RTeQTL
rs28636829	ADAL	cis	Esophagus Muscularis	GTEx
rs28636829	TGM5	cis	lymphoblastoid	seeQTL
rs28636829	ADAL	cis	Artery Tibial	GTEx
rs28636829	ELL3	cis	lymphoblastoid	seeQTL
rs28636829	ADAL	cis	Thyroid	GTEx
rs28636829	ADAL	cis	Adipose Subcutaneous	GTEx
rs28636829	SERF2	cis	lymphoblastoid	seeQTL
rs28636829	ADAL	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44093600-44116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:44112600-44116400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:44112800-44116400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr15:44114600-44116400	Enhancers	Small Intestine	intestine
5	chr15:44115000-44117000	Active TSS	K562	blood
6	chr15:44115200-44116200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:44115400-44116200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:44115400-44116200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr15:44115400-44116200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr15:44115400-44116200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr15:44115400-44116200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:44115400-44116200	Flanking Active TSS	Dnd41	blood
13	chr15:44115400-44116200	Flanking Active TSS	GM12878-XiMat	blood
14	chr15:44115400-44116200	Flanking Active TSS	Hela-S3	cervix
15	chr15:44115400-44116400	Enhancers	Primary B cells from peripheral blood	blood
16	chr15:44115400-44116400	Enhancers	Stomach Mucosa	stomach
17	chr15:44115600-44116200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:44115600-44116200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr15:44115600-44116200	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr15:44115600-44116200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr15:44115600-44116200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr15:44115600-44116200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:44115600-44116200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:44115600-44116200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:44115600-44116200	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr15:44115600-44116200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:44115600-44116200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:44115600-44116200	Enhancers	Fetal Brain Male	brain
29	chr15:44115600-44116200	Flanking Active TSS	Fetal Kidney	kidney
30	chr15:44115600-44116200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr15:44115600-44116200	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr15:44115600-44116200	Flanking Active TSS	HMEC	breast
33	chr15:44115600-44116200	Flanking Active TSS	NHEK	skin
34	chr15:44115600-44116400	Enhancers	Fetal Heart	heart
35	chr15:44115600-44116600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:44115600-44117200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:44115800-44116200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr15:44115800-44116200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:44115800-44116200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:44115800-44116200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:44115800-44116200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr15:44115800-44116200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:44115800-44116200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr15:44115800-44116200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:44115800-44116200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr15:44115800-44116200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:44115800-44116200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr15:44115800-44116200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr15:44115800-44116200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:44115800-44116200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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