Variant report

Variant	rs16954937
Chromosome Location	chr17:46374436-46374437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46373164..46374962-chr17:46378148..46380200,2	K562	blood:
2	chr17:46372838..46377462-chr17:46383835..46389128,6	K562	blood:
3	chr17:46373773..46376497-chr17:46380672..46383534,2	MCF-7	breast:
4	chr17:46367583..46369623-chr17:46373634..46375148,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235300	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12326027	1.00[ASN][1000 genomes]
rs16955293	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16955495	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956835	1.00[ASN][1000 genomes]
rs28566062	1.00[ASN][1000 genomes]
rs6504258	1.00[ASN][1000 genomes]
rs7210852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7214998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8073595	1.00[ASN][1000 genomes]
rs8074754	1.00[ASN][1000 genomes]
rs8074951	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9303545	1.00[ASN][1000 genomes]
rs9891014	1.00[ASN][1000 genomes]
rs9895188	1.00[ASN][1000 genomes]
rs9899997	1.00[YRI][hapmap]
rs9907565	1.00[YRI][hapmap]
rs9908054	1.00[ASN][1000 genomes]
rs9911434	1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46371600-46375000	Weak transcription	Fetal Intestine Large	intestine
2	chr17:46372400-46375200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:46372800-46377400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46372800-46378400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:46373200-46374600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:46373200-46375000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:46373200-46375000	Enhancers	HUVEC	blood vessel
8	chr17:46373200-46375800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:46373200-46376400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr17:46373200-46376800	Enhancers	GM12878-XiMat	blood
11	chr17:46373200-46378200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr17:46373200-46378600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:46373600-46375200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr17:46373600-46375400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr17:46373600-46375800	Enhancers	Fetal Intestine Small	intestine
17	chr17:46373600-46377200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr17:46373600-46388400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:46373800-46375000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr17:46374000-46375000	Weak transcription	Primary T cells from cord blood	blood
21	chr17:46374000-46375000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:46374200-46374600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr17:46374200-46376400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr17:46374400-46374800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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