Variant report

Variant	rs9911434
Chromosome Location	chr17:46532584-46532585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46530850..46533321-chr17:46662351..46664282,2	K562	blood:
2	chr17:46532115..46533858-chr17:46568103..46570537,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11651669	0.81[LWK][hapmap]
rs12326027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954937	1.00[ASN][1000 genomes]
rs16955293	1.00[ASN][1000 genomes]
rs16955495	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs16956835	1.00[ASN][1000 genomes]
rs28566062	1.00[ASN][1000 genomes]
rs6504258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7210852	1.00[ASN][1000 genomes]
rs7213163	1.00[EUR][1000 genomes]
rs7214998	1.00[ASN][1000 genomes]
rs8073595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074088	1.00[EUR][1000 genomes]
rs8074754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074951	1.00[ASN][1000 genomes]
rs9303545	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891014	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9891149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9895188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898743	1.00[EUR][1000 genomes]
rs9901714	1.00[EUR][1000 genomes]
rs9901750	1.00[EUR][1000 genomes]
rs9903647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9908054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908741	1.00[EUR][1000 genomes]
rs9916477	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46528800-46535200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46529000-46535400	Enhancers	Fetal Thymus	thymus
3	chr17:46529200-46533800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:46530000-46532800	Enhancers	Primary B cells from peripheral blood	blood
5	chr17:46530400-46532800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr17:46531200-46533000	Weak transcription	K562	blood
7	chr17:46531400-46533800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:46531400-46534400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:46531400-46534400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr17:46531600-46533000	Enhancers	Thymus	Thymus
11	chr17:46531600-46534200	Enhancers	Primary T cells from cord blood	blood
12	chr17:46531600-46534200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:46531600-46534200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46531600-46534200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr17:46531600-46534400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr17:46531600-46534400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr17:46531600-46534400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr17:46531800-46533800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr17:46531800-46534200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr17:46531800-46534200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr17:46531800-46534200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr17:46531800-46534400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr17:46532000-46535200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr17:46532200-46533000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:46532200-46534200	Weak transcription	Primary B cells from cord blood	blood
26	chr17:46532400-46532600	Bivalent Enhancer	Small Intestine	intestine

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