Variant report

Variant	rs7213163
Chromosome Location	chr17:46536458-46536459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12326027	1.00[EUR][1000 genomes]
rs6504258	1.00[EUR][1000 genomes]
rs8073595	1.00[EUR][1000 genomes]
rs8074088	1.00[EUR][1000 genomes]
rs8074754	1.00[EUR][1000 genomes]
rs9303545	1.00[EUR][1000 genomes]
rs9891149	1.00[EUR][1000 genomes]
rs9895188	1.00[EUR][1000 genomes]
rs9898743	1.00[EUR][1000 genomes]
rs9901750	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9903647	1.00[EUR][1000 genomes]
rs9908054	1.00[EUR][1000 genomes]
rs9908741	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911434	1.00[EUR][1000 genomes]
rs9916477	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46534800-46537000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr17:46535000-46537400	Enhancers	GM12878-XiMat	blood
3	chr17:46535000-46540800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:46535400-46540600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:46536000-46536600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr17:46536400-46536600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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