Variant report

Variant	rs9901750
Chromosome Location	chr17:46550691-46550692
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46549355..46551508-chr17:46558983..46560720,2	K562	blood:
2	chr17:46514248..46517781-chr17:46547190..46550869,3	K562	blood:
3	chr17:46549229..46552170-chr17:46578852..46580866,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12326027	1.00[EUR][1000 genomes]
rs6504258	1.00[EUR][1000 genomes]
rs7213163	0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8073595	1.00[EUR][1000 genomes]
rs8074088	1.00[EUR][1000 genomes]
rs8074754	1.00[EUR][1000 genomes]
rs9303545	1.00[EUR][1000 genomes]
rs9891149	1.00[EUR][1000 genomes]
rs9895188	1.00[EUR][1000 genomes]
rs9898743	1.00[EUR][1000 genomes]
rs9903647	1.00[EUR][1000 genomes]
rs9908054	1.00[EUR][1000 genomes]
rs9908741	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9911434	1.00[EUR][1000 genomes]
rs9916477	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46547400-46551600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46547600-46550800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr17:46547800-46550800	Enhancers	NHDF-Ad	bronchial
4	chr17:46547800-46551000	Enhancers	HMEC	breast
5	chr17:46548200-46550800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr17:46548200-46551000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:46548400-46550800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:46548600-46550800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr17:46548600-46550800	Enhancers	NHEK	skin
10	chr17:46548800-46550800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr17:46548800-46550800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:46549200-46550800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:46549200-46550800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:46549200-46550800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr17:46549400-46550800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr17:46549400-46550800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr17:46549400-46550800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr17:46549400-46550800	Enhancers	NH-A	brain
19	chr17:46549400-46551000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr17:46549400-46551000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:46549600-46550800	Enhancers	A549	lung
22	chr17:46549600-46550800	Enhancers	Osteobl	bone
23	chr17:46549800-46550800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr17:46549800-46550800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr17:46549800-46550800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr17:46550000-46550800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr17:46550200-46551400	Enhancers	HSMM	muscle
28	chr17:46550400-46554200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr17:46550400-46554800	Weak transcription	GM12878-XiMat	blood
30	chr17:46550400-46555200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr17:46550600-46550800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
32	chr17:46550600-46550800	Enhancers	Fetal Kidney	kidney
33	chr17:46550600-46553600	Weak transcription	K562	blood
34	chr17:46550600-46554600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr17:46550600-46554800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:46550600-46555800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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