Variant report

Variant	rs9903647
Chromosome Location	chr17:46525025-46525026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12326027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6504258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7213163	1.00[EUR][1000 genomes]
rs8073595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8074088	1.00[EUR][1000 genomes]
rs8074754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9303545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9891014	1.00[AFR][1000 genomes]
rs9891149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9898743	1.00[EUR][1000 genomes]
rs9901714	1.00[EUR][1000 genomes]
rs9901750	1.00[EUR][1000 genomes]
rs9908054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9908741	1.00[EUR][1000 genomes]
rs9911434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9916477	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv2761960	chr17:46504489-46529846	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46518800-46526200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr17:46519400-46525200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:46520600-46530800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:46522200-46525800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr17:46522200-46526200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr17:46522400-46525400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:46522400-46525600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:46522400-46526600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:46522800-46525200	Enhancers	Primary T cells from cord blood	blood
10	chr17:46523200-46527600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr17:46523400-46528800	Weak transcription	K562	blood
12	chr17:46523600-46529000	Weak transcription	Fetal Thymus	thymus
13	chr17:46523800-46528800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:46524000-46525600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr17:46524000-46527400	Weak transcription	Primary B cells from cord blood	blood
16	chr17:46524200-46527600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr17:46524200-46528800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:46524400-46527400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:46525000-46526000	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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