Variant report

Variant	rs16955293
Chromosome Location	chr17:46389817-46389818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46389712..46391460-chr17:46606322..46609188,2	K562	blood:
2	chr17:46384442..46386274-chr17:46387443..46390011,2	K562	blood:
3	chr17:46387897..46390593-chr17:46393041..46395162,2	K562	blood:

Variant related genes	Relation type
ENSG00000235300	Chromatin interaction
ENSG00000120094	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12326027	1.00[ASN][1000 genomes]
rs16954937	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16955495	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956835	1.00[ASN][1000 genomes]
rs28566062	1.00[ASN][1000 genomes]
rs6504258	1.00[ASN][1000 genomes]
rs7210852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7214998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8073595	1.00[ASN][1000 genomes]
rs8074754	1.00[ASN][1000 genomes]
rs8074951	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9303545	1.00[ASN][1000 genomes]
rs9891014	1.00[ASN][1000 genomes]
rs9895188	1.00[ASN][1000 genomes]
rs9899997	1.00[YRI][hapmap]
rs9907565	1.00[YRI][hapmap]
rs9908054	1.00[ASN][1000 genomes]
rs9911434	1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46375800-46396400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr17:46375800-46415800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46377200-46421000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46380200-46395400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr17:46382000-46390200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr17:46385000-46390000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:46385400-46393400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr17:46386200-46390200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:46386200-46407800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr17:46387600-46390600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:46388600-46391400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr17:46388800-46390000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr17:46388800-46390800	Enhancers	Fetal Kidney	kidney
15	chr17:46389000-46392000	Weak transcription	Fetal Intestine Small	intestine
16	chr17:46389200-46390000	Weak transcription	K562	blood
17	chr17:46389200-46393200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:46389200-46393600	Weak transcription	Primary T cells from cord blood	blood
19	chr17:46389400-46392000	Enhancers	A549	lung
20	chr17:46389800-46390000	Enhancers	GM12878-XiMat	blood
21	chr17:46389800-46390200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr17:46389800-46391000	Enhancers	Primary B cells from peripheral blood	blood

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