Variant report

Variant	rs16955438
Chromosome Location	chr15:29715446-29715447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16955427	1.00[AMR][1000 genomes]
rs16955434	1.00[AMR][1000 genomes]
rs16955450	1.00[AMR][1000 genomes]
rs57705253	1.00[AMR][1000 genomes]
rs58207596	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58413635	1.00[AMR][1000 genomes]
rs59480588	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60009024	1.00[AMR][1000 genomes]
rs73378260	1.00[AMR][1000 genomes]
rs73380278	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73380279	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73380286	1.00[AMR][1000 genomes]
rs73382115	1.00[AMR][1000 genomes]
rs73382117	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382128	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382129	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382132	1.00[AMR][1000 genomes]
rs73382136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74008470	1.00[AMR][1000 genomes]
rs74008490	1.00[AMR][1000 genomes]
rs74010415	1.00[AMR][1000 genomes]
rs74010442	1.00[AMR][1000 genomes]
rs8033651	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3364436	chr15:29459739-29853229	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29712600-29724600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links