Variant report

Variant	rs57705253
Chromosome Location	chr15:29759945-29759946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16955427	1.00[AMR][1000 genomes]
rs16955434	1.00[AMR][1000 genomes]
rs16955438	1.00[AMR][1000 genomes]
rs16955450	1.00[AMR][1000 genomes]
rs58207596	1.00[AMR][1000 genomes]
rs58413635	1.00[AMR][1000 genomes]
rs59480588	1.00[AMR][1000 genomes]
rs60009024	1.00[AMR][1000 genomes]
rs73378260	1.00[AMR][1000 genomes]
rs73380278	1.00[AMR][1000 genomes]
rs73380279	1.00[AMR][1000 genomes]
rs73380286	1.00[AMR][1000 genomes]
rs73382115	1.00[AMR][1000 genomes]
rs73382117	1.00[AMR][1000 genomes]
rs73382128	1.00[AMR][1000 genomes]
rs73382129	1.00[AMR][1000 genomes]
rs73382132	1.00[AMR][1000 genomes]
rs73382136	1.00[AMR][1000 genomes]
rs74008470	1.00[AMR][1000 genomes]
rs74008490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010442	1.00[AMR][1000 genomes]
rs8033651	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3364436	chr15:29459739-29853229	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1035536	chr15:29729596-29784023	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv542292	chr15:29729596-29784023	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1043870	chr15:29739161-29779675	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29744000-29761600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:29745600-29761600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:29757400-29768800	Weak transcription	Fetal Brain Male	brain
4	chr15:29758400-29762400	Weak transcription	Pancreas	Pancrea
5	chr15:29758800-29775000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:29759800-29760200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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