Variant report

Variant	rs16955450
Chromosome Location	chr15:29726318-29726319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16955427	1.00[AMR][1000 genomes]
rs16955434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16955438	1.00[AMR][1000 genomes]
rs57705253	1.00[AMR][1000 genomes]
rs58207596	1.00[AMR][1000 genomes]
rs58413635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59480588	1.00[AMR][1000 genomes]
rs60009024	1.00[AMR][1000 genomes]
rs73378260	1.00[AMR][1000 genomes]
rs73380278	1.00[AMR][1000 genomes]
rs73380279	1.00[AMR][1000 genomes]
rs73380286	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382117	1.00[AMR][1000 genomes]
rs73382128	1.00[AMR][1000 genomes]
rs73382129	1.00[AMR][1000 genomes]
rs73382132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73382136	1.00[AMR][1000 genomes]
rs74008470	1.00[AMR][1000 genomes]
rs74008490	1.00[AMR][1000 genomes]
rs74010415	1.00[AMR][1000 genomes]
rs74010442	1.00[AMR][1000 genomes]
rs8033651	1.00[AMR][1000 genomes]
rs930934	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3364436	chr15:29459739-29853229	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29724800-29726400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:29725000-29726600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:29725200-29726800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr15:29725200-29735200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:29725600-29726800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr15:29726000-29726600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:29726000-29727200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:29726200-29726800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:29726200-29727000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:29726200-29727000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:29726200-29729800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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