Variant report
| Variant | rs73382117 |
|---|---|
| Chromosome Location | chr15:29721957-29721958 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:29711637..29713244-chr15:29721124..29723532,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs16955427 | 1.00[AMR][1000 genomes] |
| rs16955434 | 1.00[AMR][1000 genomes] |
| rs16955438 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16955450 | 1.00[AMR][1000 genomes] |
| rs57705253 | 1.00[AMR][1000 genomes] |
| rs58207596 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58413635 | 1.00[AMR][1000 genomes] |
| rs59480588 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60009024 | 1.00[AMR][1000 genomes] |
| rs73378260 | 1.00[AMR][1000 genomes] |
| rs73380278 | 1.00[AMR][1000 genomes] |
| rs73380279 | 1.00[AMR][1000 genomes] |
| rs73380286 | 1.00[AMR][1000 genomes] |
| rs73382115 | 1.00[AMR][1000 genomes] |
| rs73382128 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73382129 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73382132 | 1.00[AMR][1000 genomes] |
| rs73382136 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74008470 | 1.00[AMR][1000 genomes] |
| rs74008490 | 1.00[AMR][1000 genomes] |
| rs74010415 | 1.00[AMR][1000 genomes] |
| rs74010442 | 1.00[AMR][1000 genomes] |
| rs8033651 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456736 | chr15:29327352-30208654 | Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv568675 | chr15:29327352-30208654 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv903747 | chr15:29361126-30008977 | Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 4 | esv3364436 | chr15:29459739-29853229 | Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:29712600-29724600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
