The 2.0 version of rSNPBase

Variant report

Variant rs16962682
Chromosome Location chr15:49938231-49938232
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:49918000-49938600 Weak transcription Right Ventricle heart
2 chr15:49918000-49938800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr15:49918200-49938400 Weak transcription HepG2 liver
4 chr15:49918200-49942200 Weak transcription GM12878-XiMat blood
5 chr15:49918600-49938800 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr15:49919800-49940200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr15:49920000-49940400 Weak transcription A549 lung
8 chr15:49920800-49940000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr15:49927000-49940000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr15:49927600-49938800 Weak transcription Primary T regulatory cells fromperipheralblood blood
11 chr15:49927800-49938600 Weak transcription Placenta Amnion Placenta Amnion
12 chr15:49928000-49940200 Weak transcription Fetal Intestine Small intestine
13 chr15:49928200-49939600 Weak transcription H9 Cell Line embryonic stem cell
14 chr15:49928200-49940400 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr15:49928200-49940600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr15:49928200-49943000 Weak transcription Lung lung
17 chr15:49928400-49939800 Weak transcription HUVEC blood vessel
18 chr15:49929000-49938800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr15:49930000-49938600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr15:49930200-49938400 Weak transcription Primary T cells fromperipheralblood blood
21 chr15:49930400-49939200 Weak transcription H1 Cell Line embryonic stem cell
22 chr15:49932400-49939200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr15:49935600-49938800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr15:49935600-49939000 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr15:49935600-49939000 Strong transcription Primary hematopoietic stem cells short term culture blood
26 chr15:49936000-49939800 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr15:49936200-49939000 Strong transcription Primary T cells from cord blood blood
28 chr15:49936200-49939200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr15:49936400-49938800 Enhancers Hela-S3 cervix
30 chr15:49936600-49938400 Enhancers Liver Liver
31 chr15:49936600-49938400 Enhancers Brain Cingulate Gyrus brain
32 chr15:49936600-49938400 Enhancers Duodenum Smooth Muscle Duodenum
33 chr15:49936600-49938600 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr15:49936600-49938600 Genic enhancers NHDF-Ad bronchial
35 chr15:49936600-49938800 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr15:49936600-49938800 Enhancers Brain Hippocampus Middle brain
37 chr15:49936600-49938800 Enhancers Colon Smooth Muscle Colon
38 chr15:49936600-49938800 Genic enhancers Rectal Smooth Muscle rectum
39 chr15:49936600-49940400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr15:49936800-49938400 Enhancers Cortex derived primary cultured neurospheres brain
41 chr15:49936800-49938600 Weak transcription Placenta Placenta
42 chr15:49936800-49939000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr15:49936800-49940600 Weak transcription Fetal Thymus thymus
44 chr15:49937000-49938400 Enhancers Fetal Lung lung
45 chr15:49937000-49938800 Weak transcription Aorta Aorta
46 chr15:49937000-49939000 Enhancers Osteobl bone
47 chr15:49937000-49939600 Weak transcription K562 blood
48 chr15:49937000-49939800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr15:49937000-49939800 Weak transcription Fetal Intestine Large intestine
50 chr15:49937000-49940000 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015