Variant report

Variant	rs74012488
Chromosome Location	chr15:49969986-49969987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49968518..49970892-chr15:49980860..49984000,3	MCF-7	breast:
2	chr15:49968339..49970198-chr15:49970893..49972415,2	MCF-7	breast:
3	chr15:49959156..49961709-chr15:49969639..49971323,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16962682	1.00[AMR][1000 genomes]
rs16962687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962694	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962726	1.00[AMR][1000 genomes]
rs16962736	1.00[AMR][1000 genomes]
rs55820213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55880877	1.00[AMR][1000 genomes]
rs56194958	1.00[AMR][1000 genomes]
rs56365767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57224380	1.00[AMR][1000 genomes]
rs57402896	1.00[AMR][1000 genomes]
rs58984166	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59572993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59606072	1.00[AMR][1000 genomes]
rs60224127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60597223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61575085	1.00[AMR][1000 genomes]
rs61702984	1.00[AMR][1000 genomes]
rs7167875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7170176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012392	1.00[AMR][1000 genomes]
rs74012429	1.00[AMR][1000 genomes]
rs74012431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012440	1.00[AMR][1000 genomes]
rs74012455	1.00[AFR][1000 genomes]
rs74012457	1.00[AMR][1000 genomes]
rs74012459	1.00[AMR][1000 genomes]
rs74012461	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012490	1.00[AMR][1000 genomes]
rs74012491	1.00[AMR][1000 genomes]
rs74014148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014150	1.00[AMR][1000 genomes]
rs74014340	1.00[AMR][1000 genomes]
rs74014341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014352	1.00[AMR][1000 genomes]
rs8028992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49966800-49970000	Weak transcription	Ovary	ovary
2	chr15:49966800-49987400	Weak transcription	NHLF	lung
3	chr15:49968200-49971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:49968400-49970800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:49968600-49971000	Weak transcription	NHDF-Ad	bronchial
6	chr15:49969800-49970000	Enhancers	Hela-S3	cervix

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