Variant report

Variant	rs16962726
Chromosome Location	chr15:49960763-49960764
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49955894..49958426-chr15:49959044..49961456,2	MCF-7	breast:
2	chr15:49959156..49961709-chr15:49969639..49971323,2	MCF-7	breast:
3	chr15:49912031..49914987-chr15:49959413..49961383,3	MCF-7	breast:
4	chr15:49958418..49961661-chr15:49962347..49965829,3	K562	blood:

Variant related genes	Relation type
ENSG00000104047	Chromatin interaction
ENSG00000166262	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16962682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962687	1.00[AMR][1000 genomes]
rs16962690	1.00[AMR][1000 genomes]
rs16962694	1.00[AMR][1000 genomes]
rs16962736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55820213	1.00[AMR][1000 genomes]
rs55880877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56194958	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56365767	1.00[AMR][1000 genomes]
rs57224380	1.00[AMR][1000 genomes]
rs57402896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58984166	1.00[AMR][1000 genomes]
rs59572993	1.00[AMR][1000 genomes]
rs59589271	1.00[AFR][1000 genomes]
rs59606072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60224127	1.00[AMR][1000 genomes]
rs60597223	1.00[AMR][1000 genomes]
rs61575085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61702984	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167875	1.00[AMR][1000 genomes]
rs7170176	1.00[AMR][1000 genomes]
rs74012392	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012431	1.00[AMR][1000 genomes]
rs74012440	1.00[AMR][1000 genomes]
rs74012457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012461	1.00[AMR][1000 genomes]
rs74012488	1.00[AMR][1000 genomes]
rs74012489	1.00[AMR][1000 genomes]
rs74012490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014148	1.00[AMR][1000 genomes]
rs74014149	1.00[AMR][1000 genomes]
rs74014150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014340	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014341	1.00[AMR][1000 genomes]
rs74014352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028992	1.00[AMR][1000 genomes]
rs8033054	1.00[AMR][1000 genomes]
rs8033587	1.00[AMR][1000 genomes]
rs8035218	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49955600-49961400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:49956600-49961400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:49957200-49965600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:49960400-49965400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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