Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11081753	0.83[AMR][1000 genomes]
rs16962785	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16962851	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs16962856	0.83[AMR][1000 genomes]
rs16962889	0.83[AMR][1000 genomes]
rs28451536	0.83[AMR][1000 genomes]
rs28516907	0.83[AMR][1000 genomes]
rs7230791	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7231076	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7234401	0.83[AMR][1000 genomes]
rs9675713	0.83[AMR][1000 genomes]
rs9945189	0.83[AMR][1000 genomes]
rs9946947	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9948293	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9948580	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9950695	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9952703	0.83[AMR][1000 genomes]
rs9952884	0.83[AMR][1000 genomes]
rs9954412	0.83[AMR][1000 genomes]
rs9955257	0.83[AMR][1000 genomes]
rs9959396	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9960121	0.83[AMR][1000 genomes]
rs9961328	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9961628	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs9964636	0.83[AMR][1000 genomes]
rs9967163	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3442186	chr18:29775504-29778302	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29772200-29780400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29772600-29776200	Weak transcription	Aorta	Aorta
3	chr18:29774800-29777200	Weak transcription	Right Ventricle	heart
4	chr18:29774800-29780200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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