Variant report

Variant	rs9967163
Chromosome Location	chr18:29780768-29780769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr18:29780628-29781128	U2OS	brain:	n/a	n/a
2	FOXA1	chr18:29780724-29781053	HepG2	liver:	n/a	chr18:29780976-29780991
3	KAP1	chr18:29780717-29781245	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ENSG00000265279	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11081753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962793	0.83[AMR][1000 genomes]
rs16962851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28450768	1.00[EUR][1000 genomes]
rs28451536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28516907	1.00[AMR][1000 genomes]
rs7230791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7231076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7234401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421919	1.00[EUR][1000 genomes]
rs73956852	1.00[EUR][1000 genomes]
rs73956854	1.00[EUR][1000 genomes]
rs9675713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9945189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9946947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9948293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9948580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9950695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9954412	1.00[AMR][1000 genomes]
rs9955257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9959396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960121	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9961328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9961628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9964636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29776800-29782200	Weak transcription	Aorta	Aorta
2	chr18:29780400-29780800	Enhancers	Duodenum Mucosa	Duodenum
3	chr18:29780400-29782400	Enhancers	Fetal Intestine Large	intestine
4	chr18:29780600-29780800	Enhancers	Small Intestine	intestine
5	chr18:29780600-29781000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr18:29780600-29781200	Enhancers	Fetal Intestine Small	intestine
7	chr18:29780600-29781400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr18:29780600-29783200	Enhancers	Rectal Mucosa Donor 31	rectum

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