Variant report

Variant	rs7230791
Chromosome Location	chr18:29774363-29774364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11081753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962785	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962793	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16962851	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28450768	1.00[EUR][1000 genomes]
rs28451536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28516907	1.00[AMR][1000 genomes]
rs7231076	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7234401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421919	1.00[EUR][1000 genomes]
rs73956852	1.00[EUR][1000 genomes]
rs73956854	1.00[EUR][1000 genomes]
rs9675713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9945189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9946947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9948293	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9948580	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9950695	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9954412	1.00[AMR][1000 genomes]
rs9955257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9959396	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9961328	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9961628	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9964636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9967163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29772200-29780400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29772600-29776200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links