Variant report

Variant	rs28516907
Chromosome Location	chr18:29819290-29819291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11081753	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962785	1.00[AMR][1000 genomes]
rs16962793	0.83[AMR][1000 genomes]
rs16962851	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962856	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451536	1.00[AMR][1000 genomes]
rs7230791	1.00[AMR][1000 genomes]
rs7231076	1.00[AMR][1000 genomes]
rs7234401	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7238073	0.82[AFR][1000 genomes]
rs9675713	1.00[AMR][1000 genomes]
rs9945189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9946947	1.00[AMR][1000 genomes]
rs9948293	1.00[AMR][1000 genomes]
rs9948580	1.00[AMR][1000 genomes]
rs9950695	1.00[AMR][1000 genomes]
rs9952703	1.00[AMR][1000 genomes]
rs9952884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9954412	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9955257	1.00[AMR][1000 genomes]
rs9959396	1.00[AMR][1000 genomes]
rs9960121	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9961328	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9961628	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9964636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9967163	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29817600-29822200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr18:29818600-29819800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:29818800-29820600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:29818800-29821200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr18:29819000-29820800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr18:29819000-29820800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:29819000-29821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr18:29819000-29821400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr18:29819000-29821600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr18:29819000-29821600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr18:29819000-29823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr18:29819000-29823400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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