Variant report

Variant	rs16971015
Chromosome Location	chr15:41078549-41078550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41059314..41061862-chr15:41077543..41079580,2	K562	blood:
2	chr15:41077859..41079629-chr15:41084264..41087034,2	K562	blood:
3	chr15:41078389..41079934-chr15:41097837..41099741,2	MCF-7	breast:
4	chr15:41078129..41079862-chr15:41083118..41085764,2	K562	blood:
5	chr15:41078138..41079704-chr15:41098230..41100236,2	MCF-7	breast:
6	chr15:41076638..41081333-chr15:41183432..41186983,4	MCF-7	breast:
7	chr15:41076760..41081645-chr15:41164224..41167556,4	MCF-7	breast:
8	chr15:41076601..41080762-chr15:41116674..41123009,6	MCF-7	breast:
9	chr15:41073963..41081336-chr15:41133817..41139655,12	MCF-7	breast:
10	chr15:41070585..41074304-chr15:41075540..41078752,3	K562	blood:
11	chr15:41073204..41083534-chr15:41133992..41141155,16	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000264256	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000166143	Chromatin interaction
ENSG00000166140	Chromatin interaction
ENSG00000104129	Chromatin interaction
ENSG00000104142	Chromatin interaction
ENSG00000104140	Chromatin interaction
ENSG00000261183	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12102251	0.85[AMR][1000 genomes]
rs16970995	0.85[AMR][1000 genomes]
rs16970997	0.85[AMR][1000 genomes]
rs16971004	0.85[AMR][1000 genomes]
rs16971008	0.83[AMR][1000 genomes]
rs16971013	1.00[AMR][1000 genomes]
rs1814415	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2004043	1.00[AMR][1000 genomes]
rs2412552	1.00[AMR][1000 genomes]
rs28460049	0.85[AMR][1000 genomes]
rs28480346	1.00[AMR][1000 genomes]
rs28498351	1.00[AMR][1000 genomes]
rs28578011	0.85[AMR][1000 genomes]
rs28716513	0.83[AMR][1000 genomes]
rs28718778	1.00[AMR][1000 genomes]
rs28727420	0.85[AMR][1000 genomes]
rs28736321	0.85[AMR][1000 genomes]
rs34819163	0.83[AMR][1000 genomes]
rs4343248	0.85[AMR][1000 genomes]
rs57191378	0.85[AMR][1000 genomes]
rs57380807	0.85[AMR][1000 genomes]
rs58036350	1.00[AMR][1000 genomes]
rs61317135	1.00[AMR][1000 genomes]
rs61405952	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6492966	0.83[AMR][1000 genomes]
rs7165694	1.00[AMR][1000 genomes]
rs7166719	0.85[AMR][1000 genomes]
rs7172251	0.83[AMR][1000 genomes]
rs7178363	0.85[AMR][1000 genomes]
rs7182456	0.83[AMR][1000 genomes]
rs73398510	0.83[AMR][1000 genomes]
rs73398512	1.00[AMR][1000 genomes]
rs73398517	0.85[AMR][1000 genomes]
rs73398522	0.85[AMR][1000 genomes]
rs73398528	0.85[AMR][1000 genomes]
rs73398537	0.85[AMR][1000 genomes]
rs73398540	0.85[AMR][1000 genomes]
rs73398560	0.85[AMR][1000 genomes]
rs73398591	0.85[AMR][1000 genomes]
rs934783	0.81[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41062400-41079400	Weak transcription	Right Atrium	heart
2	chr15:41062600-41079000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:41067600-41085400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41068000-41087800	Weak transcription	Fetal Heart	heart
5	chr15:41069200-41079200	Weak transcription	A549	lung
6	chr15:41069400-41079200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:41069400-41079400	Weak transcription	NHDF-Ad	bronchial
8	chr15:41071800-41078800	Weak transcription	Osteobl	bone
9	chr15:41071800-41079200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:41071800-41079200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:41071800-41079200	Weak transcription	Brain Substantia Nigra	brain
12	chr15:41072000-41078800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:41072000-41078800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:41072000-41079000	Weak transcription	HUVEC	blood vessel
15	chr15:41072000-41079200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:41072200-41078800	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:41072200-41079400	Weak transcription	Brain Anterior Caudate	brain
18	chr15:41072200-41079400	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:41072200-41079400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:41072200-41079400	Weak transcription	Fetal Thymus	thymus
21	chr15:41072200-41079600	Weak transcription	Aorta	Aorta
22	chr15:41072400-41078600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:41072400-41078600	Weak transcription	Esophagus	oesophagus
24	chr15:41072400-41078600	Weak transcription	Thymus	Thymus
25	chr15:41072400-41078600	Weak transcription	Dnd41	blood
26	chr15:41072400-41078800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:41072400-41078800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:41072400-41078800	Weak transcription	GM12878-XiMat	blood
29	chr15:41072400-41079000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:41072400-41079000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:41072400-41079000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:41072400-41079000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:41072400-41079000	Weak transcription	Brain Angular Gyrus	brain
34	chr15:41072400-41079000	Weak transcription	Fetal Intestine Large	intestine
35	chr15:41072400-41079200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:41072400-41079200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:41072400-41079200	Weak transcription	Adipose Nuclei	Adipose
38	chr15:41072400-41079200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:41072400-41079200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:41072400-41079400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:41072400-41079400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:41072400-41079400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:41072400-41079400	Weak transcription	NHLF	lung
44	chr15:41072400-41079600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:41072400-41083400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:41072400-41090200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:41072600-41078600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:41072600-41078600	Weak transcription	Colonic Mucosa	Colon
49	chr15:41072600-41078600	Weak transcription	NH-A	brain
50	chr15:41072600-41078800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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