Variant report

Variant	rs73398560
Chromosome Location	chr15:41086261-41086262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41077859..41079629-chr15:41084264..41087034,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16971013	0.85[AMR][1000 genomes]
rs16971015	0.85[AMR][1000 genomes]
rs1814415	0.81[AFR][1000 genomes]
rs2004043	0.85[AMR][1000 genomes]
rs2412552	0.85[AMR][1000 genomes]
rs28480346	0.85[AMR][1000 genomes]
rs28498351	0.85[AMR][1000 genomes]
rs28718778	0.85[AMR][1000 genomes]
rs58036350	0.85[AMR][1000 genomes]
rs61317135	0.85[AMR][1000 genomes]
rs61405952	0.82[AFR][1000 genomes]
rs7165694	0.85[AMR][1000 genomes]
rs73398512	0.85[AMR][1000 genomes]
rs934783	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41068000-41087800	Weak transcription	Fetal Heart	heart
2	chr15:41072400-41090200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:41072600-41098600	Weak transcription	Fetal Brain Female	brain
4	chr15:41072600-41098600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:41078200-41098600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:41079600-41098800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:41080000-41089200	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:41080000-41090400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:41080000-41094600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:41080000-41099000	Weak transcription	Aorta	Aorta
11	chr15:41080400-41093000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:41080400-41098200	Weak transcription	GM12878-XiMat	blood
13	chr15:41080400-41098600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:41080400-41098800	Weak transcription	Brain Angular Gyrus	brain
15	chr15:41080400-41098800	Weak transcription	Brain Anterior Caudate	brain
16	chr15:41080600-41098200	Weak transcription	Fetal Thymus	thymus
17	chr15:41080600-41098600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:41080600-41098600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:41080600-41098600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:41081400-41088400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr15:41081400-41098200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:41081800-41087200	Weak transcription	Gastric	stomach
23	chr15:41081800-41088000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr15:41081800-41088000	Weak transcription	Psoas Muscle	Psoas
25	chr15:41081800-41090600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:41081800-41094600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:41081800-41094600	Weak transcription	Ovary	ovary
28	chr15:41082000-41087200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:41082000-41095000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:41082000-41096000	Weak transcription	Dnd41	blood
31	chr15:41082000-41098600	Weak transcription	Fetal Lung	lung
32	chr15:41082000-41098800	Weak transcription	Fetal Kidney	kidney
33	chr15:41082400-41088200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:41082400-41090600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:41082600-41088400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:41082600-41089000	Enhancers	Stomach Mucosa	stomach
37	chr15:41082800-41086800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:41082800-41088200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:41083000-41088200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:41083200-41093400	Weak transcription	Thymus	Thymus
41	chr15:41084400-41098200	Weak transcription	Brain Germinal Matrix	brain
42	chr15:41084600-41086400	Enhancers	HMEC	breast
43	chr15:41084800-41086400	Enhancers	Colonic Mucosa	Colon
44	chr15:41084800-41086800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:41084800-41089400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr15:41084800-41090400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:41084800-41095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:41084800-41098200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr15:41085000-41087200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:41085000-41087400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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