Variant report

Variant	rs61317135
Chromosome Location	chr15:41072902-41072903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41055716..41060288-chr15:41072655..41077591,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137880	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12102251	0.85[AMR][1000 genomes]
rs16970995	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16970997	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16971004	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16971008	0.83[AMR][1000 genomes]
rs16971013	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971015	1.00[AMR][1000 genomes]
rs1814415	0.85[AMR][1000 genomes]
rs2004043	1.00[AMR][1000 genomes]
rs2412552	1.00[AMR][1000 genomes]
rs28460049	0.85[AMR][1000 genomes]
rs28480346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498351	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578011	0.85[AMR][1000 genomes]
rs28716513	0.83[AMR][1000 genomes]
rs28718778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28727420	0.85[AMR][1000 genomes]
rs28736321	0.85[AMR][1000 genomes]
rs34819163	0.83[AMR][1000 genomes]
rs4343248	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57191378	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57380807	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58036350	1.00[AMR][1000 genomes]
rs61405952	0.85[AMR][1000 genomes]
rs6492966	0.83[AMR][1000 genomes]
rs7165694	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166719	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7172251	0.83[AMR][1000 genomes]
rs7178363	0.85[AMR][1000 genomes]
rs7182456	0.83[AMR][1000 genomes]
rs73398510	0.83[AMR][1000 genomes]
rs73398512	1.00[AMR][1000 genomes]
rs73398517	0.85[AMR][1000 genomes]
rs73398522	0.85[AMR][1000 genomes]
rs73398528	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73398537	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73398540	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73398560	0.85[AMR][1000 genomes]
rs73398591	0.85[AMR][1000 genomes]
rs934783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41062400-41079400	Weak transcription	Right Atrium	heart
2	chr15:41062600-41079000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:41064200-41076200	Strong transcription	Fetal Intestine Small	intestine
4	chr15:41067600-41085400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:41067800-41075200	Weak transcription	K562	blood
6	chr15:41068000-41087800	Weak transcription	Fetal Heart	heart
7	chr15:41069200-41079200	Weak transcription	A549	lung
8	chr15:41069400-41074800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:41069400-41074800	Weak transcription	Fetal Kidney	kidney
10	chr15:41069400-41077400	Weak transcription	Stomach Mucosa	stomach
11	chr15:41069400-41077800	Weak transcription	Small Intestine	intestine
12	chr15:41069400-41079200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:41069400-41079400	Weak transcription	NHDF-Ad	bronchial
14	chr15:41069800-41077800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:41071400-41073200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:41071600-41076800	Weak transcription	Psoas Muscle	Psoas
17	chr15:41071600-41077400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:41071800-41074600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:41071800-41074600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:41071800-41077600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:41071800-41077800	Weak transcription	Left Ventricle	heart
22	chr15:41071800-41078000	Weak transcription	HSMM	muscle
23	chr15:41071800-41078800	Weak transcription	Osteobl	bone
24	chr15:41071800-41079200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:41071800-41079200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:41071800-41079200	Weak transcription	Brain Substantia Nigra	brain
27	chr15:41072000-41074600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:41072000-41077600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:41072000-41077600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:41072000-41077600	Weak transcription	HMEC	breast
31	chr15:41072000-41078800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:41072000-41078800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:41072000-41079000	Weak transcription	HUVEC	blood vessel
34	chr15:41072000-41079200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:41072200-41074800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:41072200-41077600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr15:41072200-41077800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:41072200-41077800	Weak transcription	Fetal Lung	lung
39	chr15:41072200-41078800	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:41072200-41079400	Weak transcription	Brain Anterior Caudate	brain
41	chr15:41072200-41079400	Weak transcription	Colon Smooth Muscle	Colon
42	chr15:41072200-41079400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:41072200-41079400	Weak transcription	Fetal Thymus	thymus
44	chr15:41072200-41079600	Weak transcription	Aorta	Aorta
45	chr15:41072400-41074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:41072400-41074800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr15:41072400-41077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:41072400-41077600	Weak transcription	Placenta	Placenta
49	chr15:41072400-41077600	Weak transcription	Ovary	ovary
50	chr15:41072400-41077600	Weak transcription	Rectal Mucosa Donor 31	rectum

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