Variant report

Variant	rs16977284
Chromosome Location	chr15:57477489-57477490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57475652..57477530-chr15:57480574..57482359,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1045665	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518898	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518904	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12437713	1.00[YRI][hapmap]
rs12900589	1.00[YRI][hapmap]
rs12900874	0.95[YRI][hapmap]
rs16953323	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977181	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs16977199	0.95[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977201	0.95[YRI][hapmap]
rs16977217	0.95[YRI][hapmap];0.80[AMR][1000 genomes]
rs16977218	0.95[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977232	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977235	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977242	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977244	0.82[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977245	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs16977253	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977272	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977276	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977280	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977297	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977308	0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977312	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977315	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977329	1.00[EUR][1000 genomes]
rs16977330	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977333	0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977341	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977352	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977353	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977354	0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977372	0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17415738	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1867639	1.00[EUR][1000 genomes]
rs2169466	1.00[YRI][hapmap]
rs2593220	1.00[EUR][1000 genomes]
rs2615251	1.00[EUR][1000 genomes]
rs2733316	1.00[EUR][1000 genomes]
rs2733317	1.00[EUR][1000 genomes]
rs2733343	1.00[EUR][1000 genomes]
rs2733345	1.00[EUR][1000 genomes]
rs28454221	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34560099	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183392	0.91[YRI][hapmap]
rs7496293	0.95[YRI][hapmap]
rs935327	1.00[EUR][1000 genomes]
rs935329	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57439400-57491600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:57444400-57485600	Weak transcription	Placenta	Placenta
3	chr15:57444400-57507400	Weak transcription	K562	blood
4	chr15:57444600-57490200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:57444800-57484200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:57444800-57484200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:57445400-57478400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:57447000-57484600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:57448000-57483800	Weak transcription	Lung	lung
10	chr15:57450800-57491000	Weak transcription	Left Ventricle	heart
11	chr15:57451000-57487800	Weak transcription	Psoas Muscle	Psoas
12	chr15:57451000-57490800	Weak transcription	NHEK	skin
13	chr15:57451200-57478600	Weak transcription	HMEC	breast
14	chr15:57451200-57484200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:57451200-57484200	Weak transcription	Esophagus	oesophagus
16	chr15:57451200-57490400	Weak transcription	Ovary	ovary
17	chr15:57451600-57491200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:57451800-57478400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:57452200-57481600	Weak transcription	Fetal Heart	heart
20	chr15:57452400-57490400	Weak transcription	Fetal Brain Female	brain
21	chr15:57453800-57485400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:57453800-57524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:57457200-57499400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:57457400-57478400	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:57458200-57505200	Strong transcription	Fetal Thymus	thymus
26	chr15:57459200-57488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:57459200-57492600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:57459800-57477800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr15:57459800-57478400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:57459800-57490200	Weak transcription	HSMMtube	muscle
31	chr15:57460000-57484200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:57460400-57481000	Weak transcription	Aorta	Aorta
33	chr15:57460400-57484000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:57460400-57486400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr15:57461400-57484400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:57462400-57485400	Weak transcription	Fetal Kidney	kidney
37	chr15:57463800-57477800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:57463800-57484200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr15:57463800-57489200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:57464000-57477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:57464000-57478600	Weak transcription	NH-A	brain
42	chr15:57464000-57484400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:57464200-57485000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:57465000-57484200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:57465000-57484200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:57465600-57478400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:57466000-57478400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:57466400-57478400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:57466800-57478400	Weak transcription	GM12878-XiMat	blood
50	chr15:57468800-57484400	Weak transcription	Spleen	Spleen

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