Variant report

Variant	rs935327
Chromosome Location	chr15:57537701-57537702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr15:57537652-57538297	K562	blood:	n/a	n/a
2	ATF1	chr15:57537532-57537731	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57519601..57521233-chr15:57537567..57539134,2	K562	blood:

Variant related genes	Relation type
TCF12	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1045665	1.00[EUR][1000 genomes]
rs10518898	1.00[EUR][1000 genomes]
rs10518904	1.00[EUR][1000 genomes]
rs16953323	1.00[EUR][1000 genomes]
rs16977232	1.00[EUR][1000 genomes]
rs16977235	1.00[EUR][1000 genomes]
rs16977242	1.00[EUR][1000 genomes]
rs16977244	1.00[EUR][1000 genomes]
rs16977245	1.00[EUR][1000 genomes]
rs16977253	1.00[EUR][1000 genomes]
rs16977272	1.00[EUR][1000 genomes]
rs16977276	1.00[EUR][1000 genomes]
rs16977280	1.00[EUR][1000 genomes]
rs16977284	1.00[EUR][1000 genomes]
rs16977297	1.00[EUR][1000 genomes]
rs16977308	1.00[EUR][1000 genomes]
rs16977312	1.00[EUR][1000 genomes]
rs16977315	1.00[EUR][1000 genomes]
rs16977329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977330	1.00[EUR][1000 genomes]
rs16977333	1.00[EUR][1000 genomes]
rs16977341	1.00[EUR][1000 genomes]
rs16977352	1.00[EUR][1000 genomes]
rs16977353	1.00[EUR][1000 genomes]
rs16977354	1.00[EUR][1000 genomes]
rs16977372	1.00[EUR][1000 genomes]
rs17415738	1.00[EUR][1000 genomes]
rs1867639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593220	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2615251	1.00[EUR][1000 genomes]
rs2733316	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733343	1.00[EUR][1000 genomes]
rs2733345	1.00[EUR][1000 genomes]
rs28454221	1.00[EUR][1000 genomes]
rs34560099	1.00[EUR][1000 genomes]
rs935328	0.83[AFR][1000 genomes]
rs935329	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv457164	chr15:57495060-57559387	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv569578	chr15:57495060-57559387	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57511800-57551600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:57511800-57565000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:57519600-57544600	Weak transcription	Psoas Muscle	Psoas
4	chr15:57520400-57576000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:57520800-57544600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:57521000-57538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:57522400-57565400	Weak transcription	Spleen	Spleen
8	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
9	chr15:57524400-57540600	Strong transcription	Primary T cells from cord blood	blood
10	chr15:57525600-57556800	Weak transcription	Pancreas	Pancrea
11	chr15:57526000-57539000	Weak transcription	Gastric	stomach
12	chr15:57526000-57539200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:57526000-57539200	Weak transcription	Lung	lung
14	chr15:57526000-57542600	Weak transcription	Right Ventricle	heart
15	chr15:57526000-57550200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:57526400-57539200	Weak transcription	Aorta	Aorta
17	chr15:57526600-57539000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:57526600-57545400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:57526600-57554400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:57526600-57574200	Weak transcription	Hela-S3	cervix
21	chr15:57526800-57545400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:57526800-57554200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:57527200-57538200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:57528200-57545200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:57528400-57538600	Weak transcription	Ovary	ovary
26	chr15:57528400-57545400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:57528400-57554800	Weak transcription	NHEK	skin
28	chr15:57528600-57539000	Weak transcription	A549	lung
29	chr15:57529000-57538600	Weak transcription	Placenta	Placenta
30	chr15:57529000-57545400	Weak transcription	HMEC	breast
31	chr15:57529400-57543400	Weak transcription	HUVEC	blood vessel
32	chr15:57529600-57538000	Weak transcription	Fetal Brain Male	brain
33	chr15:57529600-57540000	Weak transcription	Fetal Heart	heart
34	chr15:57529800-57538600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:57530200-57543400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:57530800-57551200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:57531000-57542400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:57531400-57541200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr15:57531600-57540200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:57533600-57568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr15:57535000-57539600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:57535000-57540000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:57535000-57541200	Strong transcription	NH-A	brain
44	chr15:57535200-57540000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:57535200-57542600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:57535400-57540000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:57535400-57540000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:57535600-57539600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:57535600-57539600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:57535600-57539800	Strong transcription	Adipose Nuclei	Adipose

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