Variant report

Variant	rs1867639
Chromosome Location	chr15:57527363-57527364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1045665	1.00[EUR][1000 genomes]
rs10518898	1.00[EUR][1000 genomes]
rs10518904	1.00[EUR][1000 genomes]
rs16953323	1.00[EUR][1000 genomes]
rs16977218	1.00[EUR][1000 genomes]
rs16977232	1.00[EUR][1000 genomes]
rs16977235	1.00[EUR][1000 genomes]
rs16977242	1.00[EUR][1000 genomes]
rs16977244	1.00[EUR][1000 genomes]
rs16977245	1.00[EUR][1000 genomes]
rs16977253	1.00[EUR][1000 genomes]
rs16977272	1.00[EUR][1000 genomes]
rs16977276	1.00[EUR][1000 genomes]
rs16977280	1.00[EUR][1000 genomes]
rs16977284	1.00[EUR][1000 genomes]
rs16977297	1.00[EUR][1000 genomes]
rs16977308	1.00[EUR][1000 genomes]
rs16977312	1.00[EUR][1000 genomes]
rs16977315	1.00[EUR][1000 genomes]
rs16977329	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977330	1.00[EUR][1000 genomes]
rs16977333	1.00[EUR][1000 genomes]
rs16977341	1.00[EUR][1000 genomes]
rs16977352	1.00[EUR][1000 genomes]
rs16977353	1.00[EUR][1000 genomes]
rs16977354	1.00[EUR][1000 genomes]
rs16977372	1.00[EUR][1000 genomes]
rs17415738	1.00[EUR][1000 genomes]
rs1867641	1.00[YRI][hapmap]
rs2593217	0.96[YRI][hapmap]
rs2593220	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593221	0.96[YRI][hapmap]
rs2615251	1.00[EUR][1000 genomes]
rs2703599	0.96[YRI][hapmap]
rs2733316	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733317	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733323	0.96[YRI][hapmap]
rs2733343	0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs2733345	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs28454221	1.00[EUR][1000 genomes]
rs34560099	1.00[EUR][1000 genomes]
rs7180558	0.96[YRI][hapmap]
rs8037987	0.96[YRI][hapmap]
rs8042322	0.96[YRI][hapmap]
rs8043103	0.96[YRI][hapmap]
rs935327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935328	0.80[AFR][1000 genomes]
rs935329	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs997683	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv457164	chr15:57495060-57559387	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv569578	chr15:57495060-57559387	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57511600-57528000	Weak transcription	Fetal Heart	heart
2	chr15:57511800-57528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:57511800-57551600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:57511800-57565000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:57516800-57527800	Weak transcription	NHEK	skin
6	chr15:57519600-57528200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:57519600-57544600	Weak transcription	Psoas Muscle	Psoas
8	chr15:57520400-57527400	Weak transcription	Fetal Brain Female	brain
9	chr15:57520400-57529600	Weak transcription	Brain Angular Gyrus	brain
10	chr15:57520400-57576000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:57520800-57544600	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:57521000-57538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:57521400-57536800	Weak transcription	Small Intestine	intestine
14	chr15:57522200-57536200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:57522400-57565400	Weak transcription	Spleen	Spleen
16	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
17	chr15:57523000-57527400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:57523200-57527600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:57523200-57527600	Strong transcription	NHDF-Ad	bronchial
20	chr15:57523200-57529400	Weak transcription	Stomach Mucosa	stomach
21	chr15:57523400-57530000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:57523800-57527600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:57523800-57532800	Strong transcription	Dnd41	blood
24	chr15:57524000-57527400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:57524000-57527600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:57524000-57529000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:57524200-57529800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:57524400-57527600	Strong transcription	Fetal Muscle Leg	muscle
29	chr15:57524400-57527600	Strong transcription	NH-A	brain
30	chr15:57524400-57527600	Strong transcription	Osteobl	bone
31	chr15:57524400-57528200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:57524400-57528400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:57524400-57528400	Strong transcription	Liver	Liver
34	chr15:57524400-57528400	Strong transcription	Fetal Intestine Large	intestine
35	chr15:57524400-57528400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:57524400-57528600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:57524400-57528600	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr15:57524400-57528600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr15:57524400-57528600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:57524400-57528600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr15:57524400-57528600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr15:57524400-57528600	Strong transcription	Thymus	Thymus
43	chr15:57524400-57528800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:57524400-57529000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:57524400-57529000	Strong transcription	Placenta	Placenta
46	chr15:57524400-57529000	Strong transcription	HMEC	breast
47	chr15:57524400-57529200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:57524400-57529800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr15:57524400-57529800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:57524400-57535600	Strong transcription	HSMM	muscle

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