Variant report

Variant	rs16983061
Chromosome Location	chr20:21884665-21884666
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16983049	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983101	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983111	1.00[AMR][1000 genomes]
rs16983211	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983241	1.00[AMR][1000 genomes]
rs4324385	0.82[AFR][1000 genomes]
rs4511780	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56874641	1.00[AMR][1000 genomes]
rs73298247	0.82[AFR][1000 genomes]
rs73298272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298276	0.96[AFR][1000 genomes]
rs73300239	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302248	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8121307	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585714	chr20:21863397-21918447	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
4	nsv1061217	chr20:21875728-21906483	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21879400-21886400	Enhancers	Colon Smooth Muscle	Colon
2	chr20:21882200-21885000	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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