Variant report

Variant	rs16983211
Chromosome Location	chr20:21965223-21965224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16983049	1.00[AMR][1000 genomes]
rs16983061	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983087	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983101	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983111	1.00[AMR][1000 genomes]
rs16983241	1.00[AMR][1000 genomes]
rs4511780	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56874641	1.00[AMR][1000 genomes]
rs73298272	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300239	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302211	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8121307	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv585716	chr20:21906780-21967950	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21957600-21976600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:21964600-21968000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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