Variant report

Variant	rs73300239
Chromosome Location	chr20:21902629-21902630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16983049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983061	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983087	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983101	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983111	1.00[AMR][1000 genomes]
rs16983211	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983241	1.00[AMR][1000 genomes]
rs4511780	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56874641	1.00[AMR][1000 genomes]
rs73298272	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298276	0.87[AFR][1000 genomes]
rs73302211	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302248	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8121307	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585714	chr20:21863397-21918447	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
4	nsv1061217	chr20:21875728-21906483	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	n/a
5	nsv912815	chr20:21884693-21953649	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21897400-21906000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr20:21902200-21904600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links