Variant report

Variant	rs73302211
Chromosome Location	chr20:21937342-21937343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16983049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983111	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983211	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16983241	1.00[AMR][1000 genomes]
rs4511780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56874641	1.00[AMR][1000 genomes]
rs73298272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298276	0.92[AFR][1000 genomes]
rs73300239	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302248	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8121307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv912815	chr20:21884693-21953649	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv585715	chr20:21906780-21951847	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv585716	chr20:21906780-21967950	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv585717	chr20:21917393-21949593	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv458947	chr20:21917393-21961410	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv585718	chr20:21917393-21961410	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21937200-21937600	ZNF genes & repeats	Pancreas	Pancrea
2	chr20:21937200-21937800	ZNF genes & repeats	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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