Variant report
| Variant | rs17004324 |
|---|---|
| Chromosome Location | chr21:16203653-16203654 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16199164..16202875-chr21:16203134..16206995,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226406 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10482859 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11909720 | 0.91[YRI][hapmap] |
| rs11910518 | 1.00[EUR][1000 genomes] |
| rs11910774 | 0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11911422 | 0.90[YRI][hapmap] |
| rs11911631 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17004297 | 0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17464760 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1882866 | 0.91[YRI][hapmap] |
| rs2822852 | 1.00[EUR][1000 genomes] |
| rs2822921 | 1.00[EUR][1000 genomes] |
| rs2822926 | 1.00[EUR][1000 genomes] |
| rs7275506 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7278150 | 1.00[EUR][1000 genomes] |
| rs7282147 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7282632 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7283881 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73344264 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73892018 | 1.00[EUR][1000 genomes] |
| rs73892019 | 1.00[EUR][1000 genomes] |
| rs8127892 | 0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8132587 | 1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869911 | chr21:16184645-16210579 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16199200-16204600 | Weak transcription | K562 | blood |
