Variant report

Variant	rs2822852
Chromosome Location	chr21:16079576-16079577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10482859	1.00[EUR][1000 genomes]
rs11910518	1.00[EUR][1000 genomes]
rs11910774	1.00[EUR][1000 genomes]
rs11911631	1.00[EUR][1000 genomes]
rs17004297	1.00[EUR][1000 genomes]
rs17004324	1.00[EUR][1000 genomes]
rs17464760	1.00[EUR][1000 genomes]
rs2822921	1.00[EUR][1000 genomes]
rs2822926	1.00[EUR][1000 genomes]
rs7275506	1.00[EUR][1000 genomes]
rs7278150	1.00[EUR][1000 genomes]
rs7282147	1.00[EUR][1000 genomes]
rs7282632	1.00[EUR][1000 genomes]
rs7283881	1.00[EUR][1000 genomes]
rs73344264	1.00[EUR][1000 genomes]
rs73892018	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73892019	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8127892	1.00[EUR][1000 genomes]
rs8132587	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16078000-16080200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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