Variant report

Variant	rs17008563
Chromosome Location	chr4:85244903-85244904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17008425	1.00[AMR][1000 genomes]
rs17008462	1.00[AMR][1000 genomes]
rs17008477	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008484	1.00[AMR][1000 genomes]
rs17008576	1.00[AMR][1000 genomes]
rs17008581	1.00[AMR][1000 genomes]
rs17008641	0.81[AFR][1000 genomes]
rs17008671	1.00[AMR][1000 genomes]
rs17008760	1.00[AMR][1000 genomes]
rs17008767	1.00[AMR][1000 genomes]
rs17008783	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85239600-85246600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85243200-85245200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:85244000-85245200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:85244800-85245200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:85244800-85247200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:85244800-85247600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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