Variant report

Variant	rs17008760
Chromosome Location	chr4:85304648-85304649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17008425	1.00[AMR][1000 genomes]
rs17008462	1.00[AMR][1000 genomes]
rs17008477	1.00[AMR][1000 genomes]
rs17008484	1.00[AMR][1000 genomes]
rs17008563	1.00[AMR][1000 genomes]
rs17008576	1.00[AMR][1000 genomes]
rs17008581	1.00[AMR][1000 genomes]
rs17008671	1.00[AMR][1000 genomes]
rs17008767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85302600-85305200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85303000-85306000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:85303400-85305800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:85303600-85305800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:85304000-85305800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:85304000-85306600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:85304200-85305600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:85304600-85307200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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