Variant report

Variant	rs17008576
Chromosome Location	chr4:85246722-85246723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17008425	1.00[AMR][1000 genomes]
rs17008462	1.00[AMR][1000 genomes]
rs17008477	1.00[AMR][1000 genomes]
rs17008484	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008563	1.00[AMR][1000 genomes]
rs17008581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008671	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008760	1.00[AMR][1000 genomes]
rs17008767	1.00[AMR][1000 genomes]
rs17008783	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85244800-85247200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:85244800-85247600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:85245000-85246800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:85245000-85247000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:85245000-85247000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:85245200-85247200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:85245200-85247200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:85245400-85246800	Enhancers	Brain Germinal Matrix	brain
9	chr4:85245400-85247000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:85245600-85246800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr4:85246000-85246800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:85246000-85247200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:85246000-85247200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:85246600-85248000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr4:85246600-85249400	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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