Variant report

Variant	rs17008767
Chromosome Location	chr4:85306761-85306762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17008425	1.00[AMR][1000 genomes]
rs17008462	1.00[AMR][1000 genomes]
rs17008477	1.00[AMR][1000 genomes]
rs17008484	1.00[AMR][1000 genomes]
rs17008563	1.00[AMR][1000 genomes]
rs17008576	1.00[AMR][1000 genomes]
rs17008581	1.00[AMR][1000 genomes]
rs17008671	1.00[AMR][1000 genomes]
rs17008760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85304600-85307200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:85305200-85307000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:85305400-85307000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:85305400-85307200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:85305600-85307200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:85305600-85307600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:85305800-85306800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:85305800-85307200	Enhancers	Fetal Stomach	stomach
9	chr4:85305800-85308000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:85306000-85307000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr4:85306000-85307400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:85306200-85307400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:85306400-85307800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr4:85306600-85306800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr4:85306600-85306800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
16	chr4:85306600-85307000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
17	chr4:85306600-85307600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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