Variant report

Variant	rs17011066
Chromosome Location	chr4:121080273-121080274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11940175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1389430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010340	0.85[AMR][1000 genomes]
rs17011138	1.00[EUR][1000 genomes]
rs34768491	1.00[EUR][1000 genomes]
rs55741731	0.85[AMR][1000 genomes]
rs56096220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60454288	1.00[EUR][1000 genomes]
rs6534173	1.00[EUR][1000 genomes]
rs67050720	1.00[EUR][1000 genomes]
rs6815652	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6835106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6841663	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6854986	1.00[EUR][1000 genomes]
rs72914381	1.00[EUR][1000 genomes]
rs72914393	1.00[EUR][1000 genomes]
rs72916020	1.00[EUR][1000 genomes]
rs72916022	1.00[EUR][1000 genomes]
rs72916028	1.00[EUR][1000 genomes]
rs72916051	1.00[EUR][1000 genomes]
rs72916055	1.00[EUR][1000 genomes]
rs72916058	1.00[EUR][1000 genomes]
rs72916060	1.00[EUR][1000 genomes]
rs72916082	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72918117	1.00[EUR][1000 genomes]
rs72920007	1.00[EUR][1000 genomes]
rs72920008	1.00[EUR][1000 genomes]
rs72920009	1.00[EUR][1000 genomes]
rs72920025	1.00[EUR][1000 genomes]
rs72920040	1.00[EUR][1000 genomes]
rs72920047	1.00[EUR][1000 genomes]
rs72920048	1.00[EUR][1000 genomes]
rs72920062	1.00[EUR][1000 genomes]
rs72920064	1.00[EUR][1000 genomes]
rs72920070	1.00[EUR][1000 genomes]
rs72920091	1.00[EUR][1000 genomes]
rs73842810	1.00[EUR][1000 genomes]
rs7676044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1845528	chr4:121034480-121185834	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121068800-121084000	Weak transcription	Psoas Muscle	Psoas
2	chr4:121079000-121080400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:121079000-121081200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:121079800-121080600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:121080000-121080400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr4:121080000-121080400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:121080000-121080400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:121080000-121080800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:121080000-121080800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:121080000-121080800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:121080000-121081000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:121080000-121081000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:121080200-121080800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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