Variant report

Variant	rs17011138
Chromosome Location	chr4:121085508-121085509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11940175	1.00[EUR][1000 genomes]
rs1389430	1.00[EUR][1000 genomes]
rs17011066	1.00[EUR][1000 genomes]
rs34768491	1.00[EUR][1000 genomes]
rs56096220	1.00[EUR][1000 genomes]
rs60454288	1.00[EUR][1000 genomes]
rs6534173	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs67050720	1.00[EUR][1000 genomes]
rs6815652	1.00[EUR][1000 genomes]
rs6835106	1.00[EUR][1000 genomes]
rs6854986	1.00[EUR][1000 genomes]
rs72914381	1.00[EUR][1000 genomes]
rs72914393	1.00[EUR][1000 genomes]
rs72916020	1.00[EUR][1000 genomes]
rs72916022	1.00[EUR][1000 genomes]
rs72916028	1.00[EUR][1000 genomes]
rs72916051	1.00[EUR][1000 genomes]
rs72916055	1.00[EUR][1000 genomes]
rs72916058	1.00[EUR][1000 genomes]
rs72916060	1.00[EUR][1000 genomes]
rs72916082	1.00[EUR][1000 genomes]
rs72916095	1.00[EUR][1000 genomes]
rs72916101	1.00[EUR][1000 genomes]
rs72918117	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72920007	1.00[EUR][1000 genomes]
rs72920008	1.00[EUR][1000 genomes]
rs72920009	1.00[EUR][1000 genomes]
rs72920025	1.00[EUR][1000 genomes]
rs72920040	1.00[EUR][1000 genomes]
rs72920047	1.00[EUR][1000 genomes]
rs72920048	1.00[EUR][1000 genomes]
rs72920062	1.00[EUR][1000 genomes]
rs72920064	1.00[EUR][1000 genomes]
rs72920070	1.00[EUR][1000 genomes]
rs72920091	1.00[EUR][1000 genomes]
rs73842810	1.00[EUR][1000 genomes]
rs7676044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1845528	chr4:121034480-121185834	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1793892	chr4:121082357-121093361	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121084400-121085800	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr4:121085000-121085600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:121085000-121085800	Enhancers	Psoas Muscle	Psoas
4	chr4:121085200-121085600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:121085200-121085800	Enhancers	Left Ventricle	heart
6	chr4:121085400-121086400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:121085400-121086600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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