Variant report

Variant	rs72920062
Chromosome Location	chr4:121210057-121210058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11936258	0.85[AMR][1000 genomes]
rs11940175	1.00[EUR][1000 genomes]
rs1389430	1.00[EUR][1000 genomes]
rs17011066	1.00[EUR][1000 genomes]
rs17011138	1.00[EUR][1000 genomes]
rs17012633	0.85[AMR][1000 genomes]
rs17012896	0.85[AMR][1000 genomes]
rs17012909	0.85[AMR][1000 genomes]
rs17012923	0.85[AMR][1000 genomes]
rs34768491	1.00[EUR][1000 genomes]
rs56096220	1.00[EUR][1000 genomes]
rs60454288	1.00[EUR][1000 genomes]
rs6534173	1.00[EUR][1000 genomes]
rs67050720	1.00[EUR][1000 genomes]
rs6815652	1.00[EUR][1000 genomes]
rs6835106	1.00[EUR][1000 genomes]
rs6854986	1.00[EUR][1000 genomes]
rs72916020	1.00[EUR][1000 genomes]
rs72916022	1.00[EUR][1000 genomes]
rs72916028	1.00[EUR][1000 genomes]
rs72916051	1.00[EUR][1000 genomes]
rs72916055	1.00[EUR][1000 genomes]
rs72916058	1.00[EUR][1000 genomes]
rs72916060	1.00[EUR][1000 genomes]
rs72916082	1.00[EUR][1000 genomes]
rs72916095	1.00[EUR][1000 genomes]
rs72916101	1.00[EUR][1000 genomes]
rs72918117	1.00[EUR][1000 genomes]
rs72920007	1.00[EUR][1000 genomes]
rs72920008	1.00[EUR][1000 genomes]
rs72920009	1.00[EUR][1000 genomes]
rs72920025	1.00[EUR][1000 genomes]
rs72920040	1.00[EUR][1000 genomes]
rs72920047	1.00[EUR][1000 genomes]
rs72920048	1.00[EUR][1000 genomes]
rs72920064	1.00[EUR][1000 genomes]
rs72920070	1.00[EUR][1000 genomes]
rs72920091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73842810	1.00[EUR][1000 genomes]
rs7676044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121208600-121213800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:121209600-121213600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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