Variant report

Variant	rs6854986
Chromosome Location	chr4:121005323-121005324
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120985605..120987258-chr4:121004705..121006717,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC110373.1-6	chr4:121004440-121006734	ENSG00000250938.1

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11940175	1.00[EUR][1000 genomes]
rs1389430	1.00[EUR][1000 genomes]
rs17011066	1.00[EUR][1000 genomes]
rs17011138	1.00[EUR][1000 genomes]
rs34768491	1.00[EUR][1000 genomes]
rs56096220	1.00[EUR][1000 genomes]
rs60454288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6534173	1.00[EUR][1000 genomes]
rs67050720	1.00[EUR][1000 genomes]
rs6815652	1.00[EUR][1000 genomes]
rs6835106	1.00[EUR][1000 genomes]
rs72914381	1.00[EUR][1000 genomes]
rs72914393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916082	1.00[EUR][1000 genomes]
rs72916095	1.00[EUR][1000 genomes]
rs72916101	1.00[EUR][1000 genomes]
rs72918117	1.00[EUR][1000 genomes]
rs72920007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920062	1.00[EUR][1000 genomes]
rs72920064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920091	1.00[EUR][1000 genomes]
rs73842810	1.00[EUR][1000 genomes]
rs7676044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120989400-121012600	Weak transcription	Aorta	Aorta
2	chr4:121000400-121007000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:121002200-121007000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:121003800-121006800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:121004600-121006000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:121004600-121006800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:121004600-121011600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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