Variant report

Variant	rs17011429
Chromosome Location	chr2:125085600-125085601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12373652	0.85[YRI][hapmap]
rs12373815	0.81[YRI][hapmap]
rs1365019	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17011420	0.81[CEU][hapmap];0.80[MEX][hapmap]
rs1820394	0.81[CEU][hapmap]
rs2553625	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3981073	0.81[CEU][hapmap];0.82[GIH][hapmap];0.85[YRI][hapmap]
rs61453543	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7564671	0.81[YRI][hapmap]
rs7564699	0.81[YRI][hapmap]
rs7574198	0.91[CEU][hapmap];0.80[MEX][hapmap];0.87[EUR][1000 genomes]
rs7591043	0.90[YRI][hapmap]
rs7603847	0.91[CEU][hapmap];0.80[MEX][hapmap];0.81[YRI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125084400-125086400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:125084600-125086400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:125084800-125088000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:125084800-125088000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:125085000-125087400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:125085200-125085600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr2:125085200-125085800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:125085200-125087200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr2:125085200-125088400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:125085400-125085800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:125085400-125086400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:125085400-125087000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:125085400-125088000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:125085600-125085800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr2:125085600-125087600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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