Variant report

Variant	rs7574198
Chromosome Location	chr2:125091035-125091036
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12373652	0.87[CEU][hapmap]
rs12373815	0.87[CEU][hapmap]
rs13384799	0.80[MEX][hapmap]
rs13423913	1.00[JPT][hapmap]
rs1365019	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs17011429	0.91[CEU][hapmap];0.80[MEX][hapmap];0.87[EUR][1000 genomes]
rs2420840	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs2553625	0.91[CEU][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs3981073	0.90[CEU][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs61453543	0.87[EUR][1000 genomes]
rs72839455	0.83[EUR][1000 genomes]
rs7564671	0.87[CEU][hapmap]
rs7564699	0.87[CEU][hapmap]
rs7591043	0.86[CEU][hapmap];0.82[YRI][hapmap]
rs7594672	1.00[CHB][hapmap]
rs7603847	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125085800-125093000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:125087400-125093000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:125087600-125091600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:125087800-125093000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:125088000-125091400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:125088200-125092600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:125088600-125092600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:125090800-125092200	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links