Variant report

Variant	rs2553625
Chromosome Location	chr2:125080181-125080182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1365019	1.00[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011420	0.81[CEU][hapmap];0.86[MEX][hapmap]
rs17011429	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1820394	0.81[CEU][hapmap]
rs2553628	0.81[MEX][hapmap]
rs3981073	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs61453543	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7574198	0.91[CEU][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs7603847	0.91[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125073000-125081000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:125077800-125083600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:125078200-125080600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:125078800-125083400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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