Variant report

Variant	rs3981073
Chromosome Location	chr2:125129080-125129081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11884566	0.90[YRI][hapmap]
rs11886998	1.00[CHD][hapmap]
rs12373652	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12373815	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13384799	1.00[ASW][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.90[YRI][hapmap]
rs1365019	0.81[CEU][hapmap]
rs17011429	0.81[CEU][hapmap];0.82[GIH][hapmap];0.85[YRI][hapmap]
rs17011610	1.00[CHD][hapmap]
rs17392176	1.00[CHD][hapmap]
rs2553625	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs6541961	1.00[CHD][hapmap]
rs7564671	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7564699	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7574198	0.90[CEU][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs7581635	0.82[CEU][hapmap]
rs7582767	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs7591043	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs7603847	0.90[CEU][hapmap];0.81[GIH][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.90[YRI][hapmap]
rs7609391	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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