Variant report

Variant	rs17013164
Chromosome Location	chr4:129281866-129281867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10518532	1.00[CEU][hapmap]
rs17013198	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17013357	1.00[CEU][hapmap]
rs34613566	0.82[EUR][1000 genomes]
rs59150919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60668559	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61587462	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6850541	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs72928249	0.82[EUR][1000 genomes]
rs72928256	0.82[EUR][1000 genomes]
rs7655151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7655383	0.82[EUR][1000 genomes]
rs7679029	0.88[ASN][1000 genomes]
rs7694151	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7694390	0.82[EUR][1000 genomes]
rs7698342	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129270600-129291800	Weak transcription	Aorta	Aorta
2	chr4:129274800-129283200	Enhancers	Fetal Heart	heart
3	chr4:129275800-129283800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:129278400-129282800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:129280200-129282600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:129280200-129282600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:129280400-129282400	Weak transcription	Osteobl	bone
8	chr4:129280400-129290400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:129280600-129282600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:129280600-129282600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:129280800-129282200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:129280800-129282400	Weak transcription	NHDF-Ad	bronchial
13	chr4:129280800-129282800	Weak transcription	NHLF	lung
14	chr4:129281600-129285600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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